Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00087 ATGAGAACTTCATGGGCAGATTCTGTCGACAACTCATCCATTGGTTCTTCAAATGCCAGTGCTGCGCGTCCTTCTCGGTCAGCATATGTTCCACCACATCTTCGTAACAAGCCACCATCTTCAGAATCCTCTTTGACATCACACCCATCTTCCTTACCGGCCAATGATCGGGTAAATTTTGGTGGGCCAACTGCTGGATATCGCGGAGGCAGTTCCTTGAATAAACCTGACTATGGAAGGCAGGACTATGGCTCTAGTGGTCGAACTGGTGGGGGTTGGAACAGTAGAGGCGGAGGGTGGGACCGTGGAAGGGAGCGTGAGGTTAACCCATTTGAGAATGATGAAGCTACAGACCATACTTTTAATGACCAAGAAAACACAGGCATTAACTTTGACGCTTATGATGATATCCCTGTGGACACTAGTGGGGAGAATGTGCCTCCACCTGTAAATACTTTTGCAGAAATAGACTTGGGTGAGGCATTGAATCAAAATATAAGGAGGTGTAAATACGTCAAACCAACTCCAGTTCAGAGGTACGCCATACCAATTTCTCTTGCGGGGCGAGATCTGATGGCTTGCGCTCAGACAGGATCAGGCAAGACAGCTGCCTTCTGTTTTCCTATCATAAGTGGAATCCTGAGGATGCCACATGTTCAGAGACCGCGTGTAGCACGAACTGCTTTTCCTCTAGCTCTCATCCTATCTCCTACACGGGAGCTTTCATGTCAGATACATGATGAGGCTAAAAAGTTTTCCTATCAAACTGGGGTTAAGGTGGTAGTTGCTTATGGAGGAGCACCAATAAACCAACAGTTGCGGGAGCTTGAGAGAGGAGTAGATATTCTTGTGGCAACTCCAGGACGTCTGGTAGATTTGTTAGAGAGGGCTAGAGTGTCACTGCAAATGATCAGATATTTAGCTCTCGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAACCTCAAATAAGGAAAATAGTTGAACAAATGGACATGCCTCCTCAAGGCATGAGACAAACAATGCTGTTTAGTGCCACTTTTCCCAAAGAGATACAGAGACTTGCATCAGATTTCCTTGACAATTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGACCTAATTGCTCAACGAGTGGAGTATGTTCTGGAATCTGACAAAAGAAGCCACCTGATGGACCTTCTTCACGCCCAGAGGGAAAATGGAATTTATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCGTTGGAACACTGGTTGTGCATTAATGGGTTTCCGGCAACTAGCATTCATGGTGACCGATCGCAGCAGGAAAGGGAACTAGCATTGAGGTCGTTCAAGAGTGGAAACACGCCAATTTTAGTGGCAACGGATGTTGCAGCTCGCGGTCTTGATATTCCACGTGTAGCTCATGTGGTAAATTTTGATCTTCCGAATGACATTGATGATTATGTGCATCGGATAGGAAGAACAGGGAGGGCTGGTAAAATGGGGCTAGCAACAGCCTTCTTCAATGACAATAATCTGTCATTGGCTAAGCCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACACGTTATGCAGCCAGAGCTTCCTATGGTGGTGGCAACAGAAATCGGCGTTCAGGGGGAGCCCGTTTTGGTGGCCGTGATTATAGGAGGGACAACCAACATAATAAAGGAGCCGACTACTACGGTGGAACAAGTGGATACGGCGTTCCTGCCTCTTATGGTGGAGGTTATGGTCCTCCAGGGGTTTCTAGCGCCTGGGATTAG 1824 0.4698 MRTSWADSVDNSSIGSSNASAARPSRSAYVPPHLRNKPPSSESSLTSHPSSLPANDRVNFGGPTAGYRGGSSLNKPDYGRQDYGSSGRTGGGWNSRGGGWDRGREREVNPFENDEATDHTFNDQENTGINFDAYDDIPVDTSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRMPHVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGMRQTMLFSATFPKEIQRLASDFLDNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLAKPLADLMQEANQEVPAWLTRYAARASYGGGNRNRRSGGARFGGRDYRRDNQHNKGADYYGGTSGYGVPASYGGGYGPPGVSSAWD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00087 607 CDD SF2_C_DEAD 378 514 - -
Pral5517g00087 607 MobiDBLite consensus disorder prediction 560 576 - -
Pral5517g00087 607 Gene3D - 106 367 IPR027417 -
Pral5517g00087 607 MobiDBLite consensus disorder prediction 1 128 - -
Pral5517g00087 607 Pfam Helicase conserved C-terminal domain 391 505 IPR001650 -
Pral5517g00087 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 544 IPR001650 -
Pral5517g00087 607 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 121 544 - -
Pral5517g00087 607 SMART helicmild6 424 505 IPR001650 -
Pral5517g00087 607 MobiDBLite consensus disorder prediction 99 121 - -
Pral5517g00087 607 FunFam Probable ATP-dependent RNA helicase DDX4 113 368 - -
Pral5517g00087 607 MobiDBLite consensus disorder prediction 1 24 - -
Pral5517g00087 607 Gene3D - 368 549 IPR027417 -
Pral5517g00087 607 Pfam DEAD/DEAH box helicase 175 355 IPR011545 GO:0003676|GO:0005524
Pral5517g00087 607 CDD DEADc_DDX3_DDX4 152 372 IPR044763 GO:0003724|GO:0005524
Pral5517g00087 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 520 IPR027417 -
Pral5517g00087 607 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Pral5517g00087 607 FunFam ATP-dependent RNA helicase RhlB 369 548 - -
Pral5517g00087 607 SMART ultradead3 170 381 IPR014001 -
Pral5517g00087 607 MobiDBLite consensus disorder prediction 551 581 - -
Pral5517g00087 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 366 IPR014001 -
Pral5517g00087 607 MobiDBLite consensus disorder prediction 37 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00087 Pral-Chr5517 426575 432158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00087 149 537 Eukaryotic Initiation Factors Gene Family AT3G19760 31.378 2.84e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00087 K11594 - gmx:100818326 912.524