Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00054 ATGGAGTTGGCCTTGAGCTTAGGAGACGCACCGAAGCCCTTCTCTTTTCTTGACAAGCTCACCAACATGCCCCTCGCCGCCAACCGATGGAATCATCACAGAGAAGGCAATGAAGACGCTAGGAGTTCGTCGGCTCCGCCTGTTCAGCTTCATCTTCTTCCCTTGACCCCTCTCCCTCCAAACCCTCCTCCACCTCCGCGCCTTTCAATTCCTTGGCTCTCCCGTCCATTGGGTGGTGAAGAGATTTCGTCAGATAGAGTGGTGACTGCGAGGAGTTTGGATGTGAACAGCGCGCCGGCAGACGTAGATGAGGCCGACGACGCTACTGCACTCTCATCTCCGAACAGTGAGATCTCATCATTCCACCTGGACTTCCGCTTCAGAAATAGTCATGGCACCGGCGGCTACAAGAGAGAGCTCGAGGTCAACGCCGACAGAACCAGCGACGATGACGAAAACGGTTCATCTCGCAAGAAACTCCGACTGTCTAAGGAACAGTCTGCTTTCCTGGAAGAGAGCTTCAAAGAACACACCACTCTCAATCCCAAGCAGAAACTTGCTCTGGCGAAGCAGTTAAACCTTCGCCCTCGTCAAGTGGAAGTTTGGTTCCAAAACAGACGGGCTAGGACGAAATTGAAGCAGACGGAAGTAGATTGTGAGTATCTGAAGAGATGTTGCGAGACGCTGACGGAGGAGAACAGGAGGCTACAGAAGGAGGTGCAGGAATTAAGGGCTTTAAAGACATCGCAGCCGTATTACATGCAACTTCCGGCCACCACTCTCACCATGTGCCCCTCGTGTGAAAAGGTCGTCACCAAATCTTCGGCCGCCGGGACCACATCCACCGCGACGGCGACCGCCACTTGTACCAGCGGTGCTTCTCGAATCCCAGTAGCTTTGTCTCTGGGCGTTTCACTCTCCAACGGTCAAGCCCAAGCTCACGAGGCCCAGGCCCATCATAAGGCTTCGTGA 972 0.5422 MELALSLGDAPKPFSFLDKLTNMPLAANRWNHHREGNEDARSSSAPPVQLHLLPLTPLPPNPPPPPRLSIPWLSRPLGGEEISSDRVVTARSLDVNSAPADVDEADDATALSSPNSEISSFHLDFRFRNSHGTGGYKRELEVNADRTSDDDENGSSRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKTSQPYYMQLPATTLTMCPSCEKVVTKSSAAGTTSTATATATCTSGASRIPVALSLGVSLSNGQAQAHEAQAHHKAS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00054 323 ProSiteProfiles 'Homeobox' domain profile. 153 213 IPR001356 GO:0003677
Pral5517g00054 323 Pfam HD-ZIP protein N terminus 48 121 IPR006712 GO:0005634
Pral5517g00054 323 Coils Coil 219 249 - -
Pral5517g00054 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 288 - -
Pral5517g00054 323 CDD homeodomain 157 214 IPR001356 GO:0003677
Pral5517g00054 323 FunFam Homeobox-leucine zipper protein 18 141 218 - -
Pral5517g00054 323 SMART halz 213 256 IPR003106 GO:0006355|GO:0043565
Pral5517g00054 323 SUPERFAMILY Homeodomain-like 149 214 IPR009057 -
Pral5517g00054 323 SMART HOX_1 155 217 IPR001356 GO:0003677
Pral5517g00054 323 Pfam Homeodomain 157 211 IPR001356 GO:0003677
Pral5517g00054 323 MobiDBLite consensus disorder prediction 134 162 - -
Pral5517g00054 323 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981|GO:0006355
Pral5517g00054 323 Gene3D - 149 218 - -
Pral5517g00054 323 Pfam Homeobox associated leucine zipper 213 247 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00054 Pral-Chr5517 276823 278826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00054 47 276 Homeobox Transcription Factor Family AT5G47370 55.372 9.15e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5517g00054 HD-ZIP_N 8.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00054 K09338 - qsa:O6P43_005825 310.457