Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00053 ATGGGGGAAGAGACATCGGACGCGATGAACCTTGATTTGAATCTGGGTCCTGATCCAGAGCCAACCAACGAATCCGTCGGCTTAGAGGATTGGATTGAAGAGCCTAGGGTTAGCGAAGCATTTAGACATAGGACTCGACAGAGGTGGAGATGGCGGCATCTTCACATTAATCCTCCTGAACCTCATCGTAGGTTTGTTATGTTGCCTGAAGCCCATGATATCTCAATGCGATTGAATCATTTGCTGGCCAACCCTGGTAATGGAAGTGCGTTACAGGCTGGAGAAGGTAGCGTGGCAGCTGAAGAAAGAGCAGAGGTGGCACCAAAAGCATGCGAAACAAACAATGGTGTTATGGATGATGAAGCATCAGATAAGAAGGATGCTGTTGAAAAGGGTAGTGGCAATGATGGGAGTTTTTTTGATTGTAATATCTGTTTGGACCTGGCTAGAGATCCCGTTGTGACTTGCTGTGGTCATTTGTTTTGTTGGCCATGTCTCTATCGGTGGCTACATGTCCATTCAGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTAACATTTAAAAATGTTACACCAATATATGGTCGGGGAAACAATGTCCGTGAACTTGAGGAAGATCCTACTCTTAAAGTCCCTGTTAGACCCCATGCTAGGCGCGTTGAAAGTCTGAGGCAAACAATTCATCGAAATACATTTACATTGCCAGTGGAAGAGATGATCCGGCGTCTTGGAAGTAGATTTGATCTCTCTCGTGATGTAGGCCAGCCACCTGAGCCTGACGATGCCCGGGAGGCAGCTGACAGAACCAGCACCTTGTTAAATAGATTTTTGACCTCTCGGGCATTACGGAGAGAGCATATTCATGGGGCACCTGCAGATGATGCAGTAGACTTAACTCAAAACAACATTGGTGGCCATGAGGTAGGGGATAACGGCAGGGTCGAGTCCCTTTTACTTCGAAGAACACAGTCACATAGAACAACACTTTCTTCTCTTTCATCAGCTCTGAGTTCTGCTGAGAGATTTGTTGAGGCATATATCCGTCGCCATTCTAGAAGTAGAAACCAAGAGCAGCCTCCACCGGTGGATGATAGAGATTCCTTTTCAAGTGTTGCTGCAGTTATACACTCAGAGAGTCAAGTAGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCTTCCAGGAGGAGAAATGATGCGTCTCGGATTTCTGATGTGGATAGTGGAGATTCTCGAGCTCCCAGGCGTAGACGTTTGAACTGA 1278 0.4648 MGEETSDAMNLDLNLGPDPEPTNESVGLEDWIEEPRVSEAFRHRTRQRWRWRHLHINPPEPHRRFVMLPEAHDISMRLNHLLANPGNGSALQAGEGSVAAEERAEVAPKACETNNGVMDDEASDKKDAVEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTFKNVTPIYGRGNNVRELEEDPTLKVPVRPHARRVESLRQTIHRNTFTLPVEEMIRRLGSRFDLSRDVGQPPEPDDAREAADRTSTLLNRFLTSRALRREHIHGAPADDAVDLTQNNIGGHEVGDNGRVESLLLRRTQSHRTTLSSLSSALSSAERFVEAYIRRHSRSRNQEQPPPVDDRDSFSSVAAVIHSESQVDTAVEIDSMVSLSTSSSRRRNDASRISDVDSGDSRAPRRRRLN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00053 425 MobiDBLite consensus disorder prediction 89 130 - -
Pral5517g00053 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 120 322 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral5517g00053 425 SMART ring_2 142 182 IPR001841 -
Pral5517g00053 425 SUPERFAMILY RING/U-box 138 196 - -
Pral5517g00053 425 MobiDBLite consensus disorder prediction 1 26 - -
Pral5517g00053 425 Pfam Zinc finger, C3HC4 type (RING finger) 142 182 - -
Pral5517g00053 425 CDD RING-HC_AtRMA-like 140 183 - -
Pral5517g00053 425 ProSitePatterns Zinc finger RING-type signature. 157 166 IPR017907 -
Pral5517g00053 425 MobiDBLite consensus disorder prediction 392 425 - -
Pral5517g00053 425 FunFam Zinc finger family protein 123 196 - -
Pral5517g00053 425 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Pral5517g00053 425 MobiDBLite consensus disorder prediction 403 425 - -
Pral5517g00053 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 212 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00053 Pral-Chr5517 264302 266066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00053 1 416 C3H Transcription Factor Family AT3G58030 54.853 7.60e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00053 K10666 - gmx:100811099 588.956