LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5517g00050	ATGAGCTGTAGAATGCAGTTTTGTCGGATGGTTAAGCCTCAACTTTTAGCAGTCATCTTCATCAGTATCCTCGGCCATATCCAAGTTGACTGCTTTTCTTTCAATTTCCCCACCTTCAAACAAGAAGATCAGAATGGATTAATACTACTGAGTGAGTTTTCGCGTATATTCCGAGATGCCATCCAAGTGACACCTGATGCTTACGGTGAAGACTTGAGGAACAGGTCCGGGAGGGCCTTCTACTATAAGGCGTACAGAGTTTGGAACAAGAAGAAGAACCAAACTGCATCATTCAATACCACCTTCGTCCTCAATATCAGCCCCGATACTCCTTCAAACCCAGGTGCCGGCGAAGGTTTGGCCTTCATACTAGCTGCTGACAGAAGTCTCCCCCCCAACAGCCATGGAAGATGGCTTGGCGTTGTGAATTCTTCCACAAATGGCACTTCTGGTGCAGCCGTATTGGCTGTGGAGTTTGATACCAGAAGCAACTCCCCTGAAGACGGCTCAGACGGTCATGTTGGCGTCAACGTGAACAGTGTTTACTCCATCAAGCACGTTCCGTTACTTCCCTTGGGGATCAATATTTCATCGGGCACCAATGTGACCGTGAGAATTCAGTATGATAACGATGTGATTTCTGTCTTCGGTTACATGATGAGTGGAGCCAAAGCACAAGACATGAAGCTCTTGTTGCAATCTCCACCCCTCAATCTCACCTCATATCTCCCGGAGAAGGTATTTCTGGGGTTCTCTGCGTCGACAAGTAATTTCAATGAGCTGAACTGCATCAGAGCGTGGGAGTTCAACGGTGAAGATATTGGAGACGGAAATCAAGAACTGCTATGGGTTTGGATCACAGTTCCAGTGGTGGTGGTTATCGCCGGTGCGGTGATATTTTTCTTGATATGGCGGTGGAAACGAAATAGGGAGATAGCAGAGGATGCGTATCCGAGGATAGAAGACCAGATTAAGTATTCCTCAATGGTTCCAAAGAAGTTCCGGCTGAGGGAAATGAAAAAGGCGACGAGCAATTTCAACGACCAGAACAAGCTGGGGGAAGGTGGTTTCGGAAAAGTGTACAAGGGAATCCTGGGAAACAGGGAGATCGCCGTGAAGAGAGTCTCCAAGGATTCACGCCAAGGGAAGCAAGAATTCATAGCAGAAGTCACGACAATAGGCAGCCTTCACCACAAGAATCTGGTTAAACTCACAGGGTGGTGCTATGAGAGAAAAGAACTCCTACTCGTCTACGAGTTCATGCCCAATGGAAGCTTAGACAAATACCTATTCGGCAGCACAGACGGATCACCATATCAAAACCTTCACTGGGAAACCAGATGCAGTGCGATATACGGTGTGGCTGAAGCCCTTGACTATCTTCACAACGGCTGCGACAAGAAGGTGATTCACAGGGACATCAAGGCCAGCAATATCATGTTGGACTCAGACTTCAATGCCAAGCTGGGAGACTTTGGATTGGCTCGAACCATCCAAAAAAGAAATGAGACTCACCATTCCACGAAAGAAATAGCAGGAACGCCAGGTTACATGGCCCCAGAGACGTTTCTGACAGGGAGGGCAACAGTGGAAACAGACGTGTACGCATTTGGGGTTCTGATAATGGAAGTAGTCTGTGGGAAGAGGCCAGGGAACATGTGTGTTCAGAACGACTACAAGAATAGCATAGTGTACTGGGTGTGGGAGATGTATGGGAATGGAAGAACACTAGACGGAGTGGATAGGAGAATAAAGAAGGAGATAGAGGAAGACGAGGAACGAGTGGAAAGAGTGATAGTGCTAGGCCTGGCTTGTTGCCATCCCAATCCTCACAAAAGGCCATCCATGAAGACAGTACTGCAGGTCCTGACAGGCGAGGTGGCTCCGCCGGAGGTCCCGAGGGAACGGCCGGCTTTTGTGTGGCCGGCCGCTCCCCCTTCCTTCAACGTCAATGATAACTCCATTAATTCGGCCCAACTCACTCCTCCCTTCACTCAGCTCACCGGCAGATGA	2013	0.4868	MSCRMQFCRMVKPQLLAVIFISILGHIQVDCFSFNFPTFKQEDQNGLILLSEFSRIFRDAIQVTPDAYGEDLRNRSGRAFYYKAYRVWNKKKNQTASFNTTFVLNISPDTPSNPGAGEGLAFILAADRSLPPNSHGRWLGVVNSSTNGTSGAAVLAVEFDTRSNSPEDGSDGHVGVNVNSVYSIKHVPLLPLGINISSGTNVTVRIQYDNDVISVFGYMMSGAKAQDMKLLLQSPPLNLTSYLPEKVFLGFSASTSNFNELNCIRAWEFNGEDIGDGNQELLWVWITVPVVVVIAGAVIFFLIWRWKRNREIAEDAYPRIEDQIKYSSMVPKKFRLREMKKATSNFNDQNKLGEGGFGKVYKGILGNREIAVKRVSKDSRQGKQEFIAEVTTIGSLHHKNLVKLTGWCYERKELLLVYEFMPNGSLDKYLFGSTDGSPYQNLHWETRCSAIYGVAEALDYLHNGCDKKVIHRDIKASNIMLDSDFNAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLIMEVVCGKRPGNMCVQNDYKNSIVYWVWEMYGNGRTLDGVDRRIKKEIEEDEERVERVIVLGLACCHPNPHKRPSMKTVLQVLTGEVAPPEVPRERPAFVWPAAPPSFNVNDNSINSAQLTPPFTQLTGR	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5517g00050	670	CDD	lectin_legume_LecRK_Arcelin_ConA	32	270	IPR001220	GO:0030246
	Pral5517g00050	670	Gene3D	Phosphorylase Kinase; domain 1	331	420	-	-
	Pral5517g00050	670	ProSiteProfiles	Protein kinase domain profile.	346	639	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5517g00050	670	SUPERFAMILY	Protein kinase-like (PK-like)	327	623	IPR011009	-
	Pral5517g00050	670	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	331	420	-	-
	Pral5517g00050	670	Gene3D	-	29	278	-	-
	Pral5517g00050	670	Gene3D	Transferase(Phosphotransferase) domain 1	421	629	-	-
	Pral5517g00050	670	SMART	serkin_6	346	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5517g00050	670	ProSitePatterns	Protein kinases ATP-binding region signature.	352	373	IPR017441	GO:0005524
	Pral5517g00050	670	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	31	278	-	-
	Pral5517g00050	670	ProSitePatterns	Legume lectins beta-chain signature.	155	161	IPR019825	-
	Pral5517g00050	670	Pfam	Legume lectin domain	33	273	IPR001220	GO:0030246
	Pral5517g00050	670	SUPERFAMILY	Concanavalin A-like lectins/glucanases	30	271	IPR013320	-
	Pral5517g00050	670	CDD	STKc_IRAK	352	625	-	-
	Pral5517g00050	670	PANTHER	-	65	630	-	-
	Pral5517g00050	670	Pfam	Protein kinase domain	347	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5517g00050	670	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
	Pral5517g00050	670	FunFam	probable L-type lectin-domain containing receptor kinase S.5	421	629	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5517g00050	Pral-Chr5517	237315	239729	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5517g00050	76	639	Receptor kinase-like Gene Family	AT5G55830	36.755	4.65e-116	361

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pral5517g00050		Pkinase	6.6e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5517g00050	-		-	pcin:129307821	1164.06