Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00024 ATGAATGAGAACATGGTTGATTTCTCAGGGAGAGTTCAAGTTCAGCAGAGCCACGGACTAAACGGGGATTGTAATTCTGAGTTTGCTAATGGTTTTTGTGAATACGTGGATATTAATCAGGCGTGGAATATGGGAAGTTGCAGCCAAACACTCGCCGTCGCCGGAGGAGGAGCCCAACAGCCACCAAACCAGGGCCCTGCAAAATCCGCCCCCACCATCATGAGCCGTTTTGAATCTCCAGCTTCTGCGTTTTACGCCACAGAACGATGCATGGGGTTTCAGGTTCAGCAATATGATTCCCAGATTGGTAATCCATCTCTAACCTCTCAGTTTCCCAAGCTTAATGACTTGGAGTTCCCTCTTTATCAGTCTGATCCCAGCGTCGAATTGTCCAATACCCTGCAAGCCATGGTGAAATCTCCATCGATTAATAACCAATACTATAGATCCCCTGAAAAATCCAATAAAGTTTCTTATGGGAATGTGCCCACCACCAATCCTACTCAACAACACAGCTTGTTTATTAACGATGCTGCCTTAGTTAAGAGGAGCTCAACTTATAAGGGAAATCAGGATCATACGATGAGTTTCTCTTCTCAGCAAGAGAAGTTTTCTCCGCCACTTACATCAGAAGGGAGTGTGTCAACTGTTTCCGGCAACCATGGTTCCAATGGGACAGCAGTCTCAAGCAAAACTCGCATTAGGTGGAACCAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAAAAGGCGACGCCAAAAGCTATATTAAAGCTGATGGAATCTGATGGATTGACCATCTTCCATGTGAAGAGTCATTTGCAGAAATATAGAATAGCAAAATACATGCCAGACTCAGCTCAGGGAAAGCCTGATAAAAGATCCAATGCAGAAGATGTGCTTCATCTTGACACCAAAACTGGGTTGCAGTTGAGAGAGGCGCTTCACCTGCAGTTGGATGTTCAAAGGCGCCTTCATGAACAGCTAGAGATTCAGAGGAAGTTGCAGTTGAGAATTGAGGAACAGGGGAGGCAGCTGAAGAAGATGTTTGATCAGCAGCAAAAGACGAGTGATAGCCTCTTGAATACTCAGAATTTGAGCAGCACAGCCAATGATAATAACGATACATCAAATAATCATAGAGGTGTTGAATTATCAACTTTTGAAGGGTCTGGGAATTCTTTCTTTCCTTCCAAGATAAGTTAG 1224 0.4436 MNENMVDFSGRVQVQQSHGLNGDCNSEFANGFCEYVDINQAWNMGSCSQTLAVAGGGAQQPPNQGPAKSAPTIMSRFESPASAFYATERCMGFQVQQYDSQIGNPSLTSQFPKLNDLEFPLYQSDPSVELSNTLQAMVKSPSINNQYYRSPEKSNKVSYGNVPTTNPTQQHSLFINDAALVKRSSTYKGNQDHTMSFSSQQEKFSPPLTSEGSVSTVSGNHGSNGTAVSSKTRIRWNQDLHEKFVECVNRLGGAEKATPKAILKLMESDGLTIFHVKSHLQKYRIAKYMPDSAQGKPDKRSNAEDVLHLDTKTGLQLREALHLQLDVQRRLHEQLEIQRKLQLRIEEQGRQLKKMFDQQQKTSDSLLNTQNLSSTANDNNDTSNNHRGVELSTFEGSGNSFFPSKIS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00024 407 Gene3D - 230 289 - -
Pral5517g00024 407 NCBIfam myb-like DNA-binding domain, SHAQKYF class 231 286 IPR006447 GO:0003677
Pral5517g00024 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 288 IPR017930 -
Pral5517g00024 407 MobiDBLite consensus disorder prediction 357 394 - -
Pral5517g00024 407 SUPERFAMILY Homeodomain-like 229 285 IPR009057 -
Pral5517g00024 407 Pfam MYB-CC type transfactor, LHEQLE motif 316 362 IPR025756 -
Pral5517g00024 407 Pfam Myb-like DNA-binding domain 235 284 IPR001005 -
Pral5517g00024 407 FunFam Myb family transcription factor 230 288 - -
Pral5517g00024 407 MobiDBLite consensus disorder prediction 189 230 - -
Pral5517g00024 407 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 211 382 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00024 Pral-Chr5517 127957 130537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00024 214 359 G2-like Transcription Factor Family AT4G28610 57.432 2.39e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral5517g00024 Myb_DNA-binding 1.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00024 - - gmx:100780919 449.129