Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00023 ATGGATGATTTCAAGAAGAGAAAGCTAGAAGAGGCCGGCAACGGCGATGCTTCTTCAAAGGAAGAGCTTCGCCTTCTCCTTGACCCGCTGGCCAAACCCCAGCTTGTTGATCTTCTCGCTAAACTAGGGTCCCAATATCCTTCGATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTTCATCGAAAGCTTTTTGTTCGCGGCTTGGCCTGGAATACCAGTTCAGAAACCTTGTGTGCTGCATTTCAAGAACATGGAGAAATTGAGGAAGGGGCTGTTATCTATGATAAAGCAACTGGAAAATCCCGTGGTTATGGTTTCATCACTTACAAACATATGGAATCAACTCATCGTGCATTAAGAGCCCCAAGCAAGTTGATTGATGGCAGGTTGGCTGTCTGTAATCTAGCTTGTGAGGGTCTAAGCGGAGCAAGTAATGCCCCTGATCTTTCCCTGAGGAAGCTGTACATTGGAAGCTTATCACCAGAAGTCAGCAGTGAAATGTTGCTCAACTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGGTCAGTTGCATATGACAAAGATACAAATGAATCTCGTGGTTTTGGCTTTGTTACATACAAGACTGCAGAAGCTGCGAAGAAGGCAATAGATGATCCAGAAAAGACTCTTGGGGGGAGGAACGTAATTGTAAAATATGCGGATTCCCATAAGGGTAAGACAGGACAGCCATCAGCGGTGCCAATGACAGCCTTACCTATGGCTCCGGGTTATGTGCAGATGCAGCATGTCAAAACACATATTAGCAATCCCCATGTTGGCTACAATTACCCTCAGCCCGTAGCATCATACCCTGCGCCTTCTTATCCAAGTCCTCCCGCCGCACCTGCACCTTATCCTCCTGTTTCTGGGAAGTCAACTACGCCTGTTGGAATGAACAACTACCCATGTTACTATCCTAAGCAATAA 957 0.4587 MDDFKKRKLEEAGNGDASSKEELRLLLDPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKHMESTHRALRAPSKLIDGRLAVCNLACEGLSGASNAPDLSLRKLYIGSLSPEVSSEMLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNVIVKYADSHKGKTGQPSAVPMTALPMAPGYVQMQHVKTHISNPHVGYNYPQPVASYPAPSYPSPPAAPAPYPPVSGKSTTPVGMNNYPCYYPKQ 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00023 318 Gene3D - 55 142 IPR012677 -
Pral5517g00023 318 Gene3D - 145 243 IPR012677 -
Pral5517g00023 318 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 55 132 - -
Pral5517g00023 318 FunFam UBP1-associated protein 2C-like 60 141 - -
Pral5517g00023 318 CDD RRM2_NsCP33_like 156 230 - -
Pral5517g00023 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Pral5517g00023 318 SUPERFAMILY RNA-binding domain, RBD 149 238 IPR035979 GO:0003676
Pral5517g00023 318 SUPERFAMILY RNA-binding domain, RBD 53 141 IPR035979 GO:0003676
Pral5517g00023 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 132 IPR000504 GO:0003723
Pral5517g00023 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 224 IPR000504 GO:0003723
Pral5517g00023 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Pral5517g00023 318 SMART rrm1_1 156 228 IPR000504 GO:0003723
Pral5517g00023 318 SMART rrm1_1 65 137 IPR000504 GO:0003723
Pral5517g00023 318 FunFam UBP1-associated protein 2C 142 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00023 Pral-Chr5517 123625 127168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00023 151 248 C2H2 Transcription Factor Family AT2G19380 33.654 1.69e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00023 K12741 - gmx:100776344 468.774