Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00012 ATGGCTTACACTAATAACAAGACCAACAACCAAGCCAGCACTCCTCACATGGATTCACTCCCACTTCATCAAATTCAAGACCACCGCATCTCTTTCGGAATGATGCAATCTTCTTCCTCCTCTTCCATCCCGGCCGCCAATTTTCTAAGTAAGGATTCCGGAGCTTACGATTTAGGCGACTTGGATCAAGCACTTCTTTTGTATCTCGACGGACAGGCCGACCCTTCCTCCATTAATGTTCAGGACCAAAGACAGAACTCATCATCGTCGGGAATGAGGCCTCCGACTCTCAACATTTTCCCGTCTCAGCCTATGCACGTAGACCCGCCTTCATCCAAGGCTAGCGTGGAGTTGGTTTCTCCCCAGAGCAGTGGTTCCAAGAGACCATCGGAGCCGCCCATGAAGTTGTCTAGCTCGCAAAACGAAGGCCCCGCCGCCGCGAATCAATCAGCCAAAGCTGTCAAGCGGGACAGCACTCGCAAGGGCCCAACCTCAAGCTCTGAACAGGAAGGGCCTAGAACACCTGATCCTAAGACACTTAGGAGACTAGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGAAAGAAGGCATATGTGCAGCAGCTAGAGTCAAGCAGGATCAGACTGAATCAGCTGGAACAGGAGTTGCAGCGTGCTAGAGCTCAAGGCATATTCTTCGGAGGATCGGGTGCAATTTTTGGAGGAGAGCAAGGCCTTCCTGTGGCTATGAGTACCGTTAGCTCAGATGCTGCAATGTTCGACGTGGAATACGGGAGATGGGTAGAGGAGCACCAGCGGCTAGTGTGCGAGCTGAGAGCGGCGGTTCAAGAGCACCTGCCGGAGAACGAGCTGAGGCTGTTCGTGGACAACTGCCTTGCTCACTGTGACCAAGTTATGAACCTCAAGAGCATTGTGGCTAAAACCGACGTCTTCCACCTTGTTTCCGGCATGTGGAAGACTCCCGCCGAGCGTTGCTTCATGTGGATCGGTGGATCTAGGCCCTCCGAACTCATTAAGATAATCCTAAGTCAAATAGAGCCGCTGACGGAGCAACAAATACTTGGGATATGTGGACTGCAACAATCCACGCAGGAGGCAGAAGATGCACTCTCACAAGGGCTGGAAGCTCTGAATCAATCTCTCTCGGAAACCATAACGTCAGACTCCTTGAGCTGCACCCCTAATATGGCCAACTACATGGGACAAATGGCCCTGGCCATGAATAAGCTCTCCACCCTCGAAGGTTTCGTCCGACAGGCGGATAGTCTTCGGCACCAAACGATCCACCGTCTGAATCAGATCCTAACGACGCGTCAGGCGGCGAGGTGTTTGCTGGCCATGGCGGAGTACTCTTATCGTCTGAGAGCCCTCAGCTCTCTGTGGGTCGCTCGCCCTCGTCAGGACTAA 1413 0.5272 MAYTNNKTNNQASTPHMDSLPLHQIQDHRISFGMMQSSSSSSIPAANFLSKDSGAYDLGDLDQALLLYLDGQADPSSINVQDQRQNSSSSGMRPPTLNIFPSQPMHVDPPSSKASVELVSPQSSGSKRPSEPPMKLSSSQNEGPAAANQSAKAVKRDSTRKGPTSSSEQEGPRTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARAQGIFFGGSGAIFGGEQGLPVAMSTVSSDAAMFDVEYGRWVEEHQRLVCELRAAVQEHLPENELRLFVDNCLAHCDQVMNLKSIVAKTDVFHLVSGMWKTPAERCFMWIGGSRPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSLSETITSDSLSCTPNMANYMGQMALAMNKLSTLEGFVRQADSLRHQTIHRLNQILTTRQAARCLLAMAEYSYRLRALSSLWVARPRQD 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00012 470 Coils Coil 197 224 - -
Pral5517g00012 470 ProSiteProfiles DOG1 domain profile. 252 466 IPR025422 GO:0006351|GO:0043565
Pral5517g00012 470 MobiDBLite consensus disorder prediction 76 180 - -
Pral5517g00012 470 Pfam Seed dormancy control 270 344 IPR025422 GO:0006351|GO:0043565
Pral5517g00012 470 CDD bZIP_HBP1b-like 178 230 - -
Pral5517g00012 470 PANTHER TRANSCRIPTION FACTOR TGA9 89 469 - -
Pral5517g00012 470 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Pral5517g00012 470 SMART brlzneu 174 237 IPR004827 GO:0003700|GO:0006355
Pral5517g00012 470 MobiDBLite consensus disorder prediction 115 147 - -
Pral5517g00012 470 Pfam bZIP transcription factor 178 211 IPR004827 GO:0003700|GO:0006355
Pral5517g00012 470 FunFam BZIP family transcription factor 177 226 - -
Pral5517g00012 470 Gene3D - 177 226 - -
Pral5517g00012 470 MobiDBLite consensus disorder prediction 76 97 - -
Pral5517g00012 470 SUPERFAMILY Leucine zipper domain 178 220 IPR046347 GO:0003700|GO:0006355
Pral5517g00012 470 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00012 Pral-Chr5517 69751 76439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00012 46 470 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 63.252 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pral5517g00012 DOG1 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00012 K14431 - gmx:100815176 696.427