Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5517g00002 ATGGATTCCAATTCCTTTCTCAATTATCAACACCAACGTCAGCCCAATTCTGGGTTGCTTCGTTATCGCTCTGCCCCGACTTCGGTTCTTGCAAATTTCACTCAATCCATTGGTTCTGATCTCAGTAAGGGCAATAATCTGTGGGAGACTCCTGAATCTGAGAAATTAATCTCTAGATTCGTAAATAACGACGACCTGGATTCGTCTACTTTCCAGGAATTCGAAGCCAAGGCCCCTAAAGCACCCACCGAGGCAGCGCTTAACCATATGAACTCCTATAATGGTTTGCCTCCTCACTACCCAAGGCAGAATTCCTCGGCCAGTTCTGCCATGGATAGTTCGTATGGACTGGTGGAACCATTGGGAATGGATCATCAAGCGCAGCCGAAGAGCTTCACGCCGAATCTTCTCAGGCAAAGCAGCTCCCCTGCCGGGCTTTTCTCCAACACTTCCTTTCCAAATGGATATTCCACCGTTAATGGTGTTGGAAGCTATGGTGGGGCTAATGGCAGTAACGGTGAGGGGAGCCCATCCATGAGCAGATTGAAGAATCAGTTTGGCTTCTTATCAAGAAGGAATTCTTCTTTAGGAGTGTTGTCACAGATATCTGAGATAGAGGGTGAGAGCATTGAAGCAACCAACCCTGACAATGGGGGCTTGGGATCTGTGAATGGTTATGGCCCTGGGTTTCCGTACAGTTCCTGGAATGATGCGTCCCATCTCGGGGGCTTGAAAAGGGAGCCAAGTAACAGCGAAAAATTATTTTCTAATGCTCAGAATGGACCGCTAGGAAATCGGGTTCACATGTTATCTCATCACTTGAGTTTGCCAAAACCTTCAGCAGATATGGGTGCCATGGAGAAGTTTCTTCAATTGCCAGATGCCGTTCCTTGTAAAATCAGAGCAAAGCGAGGATGTGCTACCCATCCTCGAAGTATTGCAGAAAGGGTAAGAAGAACTCGGATCAGTGAACGAATGAGAAAACTTCAAGAGCTGGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACCTGGCTGTTGAGTACATTAAAGATCTCCAGAAACAATTCAAGACTCTCAGTGAGAAAAAGGCAAACTGCAAATGTATGAGCACGCAGAATGCAGATTCAAATCATGTCGTTTGA 1155 0.4632 MDSNSFLNYQHQRQPNSGLLRYRSAPTSVLANFTQSIGSDLSKGNNLWETPESEKLISRFVNNDDLDSSTFQEFEAKAPKAPTEAALNHMNSYNGLPPHYPRQNSSASSAMDSSYGLVEPLGMDHQAQPKSFTPNLLRQSSSPAGLFSNTSFPNGYSTVNGVGSYGGANGSNGEGSPSMSRLKNQFGFLSRRNSSLGVLSQISEIEGESIEATNPDNGGLGSVNGYGPGFPYSSWNDASHLGGLKREPSNSEKLFSNAQNGPLGNRVHMLSHHLSLPKPSADMGAMEKFLQLPDAVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKKANCKCMSTQNADSNHVV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5517g00002 384 Gene3D - 307 380 IPR036638 GO:0046983
Pral5517g00002 384 Coils Coil 353 373 - -
Pral5517g00002 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 356 IPR011598 GO:0046983
Pral5517g00002 384 FunFam Transcription factor bHLH130 family 307 376 - -
Pral5517g00002 384 SMART finulus 312 362 IPR011598 GO:0046983
Pral5517g00002 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 373 IPR036638 GO:0046983
Pral5517g00002 384 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 375 - -
Pral5517g00002 384 Pfam Helix-loop-helix DNA-binding domain 311 357 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5517g00002 Pral-Chr5517 22078 25061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5517g00002 1 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.750 1.97e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5517g00002 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5517g00002 - - qsa:O6P43_006556 461.84