Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5516g00004 ATGCTTCCCCTGTTCTTTCTACTGTGTTTTCTCTTCCCGCCTCCCTCTGTCGTCTCTCTCAACCAGGATGGTCTCTACCTCTACAAATTCAAGCTCTCCATGAATGATCCTGACTCTTCCCTCTCCTCCTGGAATGACGGCGACGCCCACCCCTGTTCATGGTCCGGCGTCACCTGCGACCCCACCAACACCTCCGTCACCGGGCTTGACCTCTCCAGCTCCAATATCGCGGGCCCACTCCCTGCTTCCATTCTCTGCAACCTCACCAACCTCACCACCCTCATCCTCTACAATAACTCCATCAACGACGCCCTCCCCTCGGAAATCTCTCTCTGTCGCAGTCTTGTTCGTGTTGACCTCGCCCAGAACCTTCTCACCGGTGCTCTGCCCCCCATCTTATCGGATCTTCCTAACCTCCGGTATCTAGACTTGACCGGCAACAACTTCTCCGGCCTCATACCCGATTCCTTTGCCAACTTTCAGAAGCTCGAGGTACTCTCACTCGTCTACAATCTTCTAGAAGGAACCATTCCCGCTTCTCTCGGAAACATTTCCTCCCTCAAGATGCTCAACCTCTCTTACAACCCGTTTTCTCCGGGTCGGATCCCTCCAGAGCTCGGCAACCTGACGAATCTCGAGGTCATGTGGCTCACACAGTGTAACTTGGTTGGCGTGATTCCTGAATCGTTCGGCAGGCTGAAGAAACTCAGGGATTTAGACCTGGCGTTGAACAATCTCGATGGTTCGATTCCCAGTTCTCTCATTGAGATGACGAGTTTGAAGCAGATTGAGTTGTATAACAACTCTTTGTCCGGTGAGTTGCCTCGGGGAATTGGAAACCTCACGGCATTGAGGCTAGTGGACGTAGCCATGAACCGGTTGAGTGGGACGATTCCAGACGAGTTGTGTCGGCTACCACTGGAGAGCCTTAACCTTTACCAGAATCAGTTTGAGGGTGAGTTGCCGGAGAGCATAGCTGACTCACCGAATCTTTATGAACTCAGATTGTTTGCTAACAAACTGACCGGAAAACTGCCTGGTAATCTCGGAAAGAATGCTCCTTTGAGGTGGGTTGACGTTTCGAACAATCAATTTTGGGGCGAAATTCCGGCGACTCTGTGTGACAACGGGAAATTGGAAGAGCTTCTGATGATATACAATTCGTTTTCTGGTAACATCCCGCCGAGTTTGGGCAGGTGTCGGAGTTTGATGCGTGTCCGGCTCGGTTTCAATCGGCTGTCCGGTGAAGTCCCGGCGGCTATTTGGGGGCTTCCACATGTGTATCTGCTTGAACTCACTCATAACTCATTTTCTGGTTCAATCGCTAAATCTATTGCTGGTGCCGGGAATCTCTCGTTGTTGTCTCTATCTAAGAACAATTTCACCGGACAGATCCCTGAAGAGGTTGGATGGTTAGAGAACCTTGAGGAATTCTCTGGTGATGATAACATGTTCAATGGATCATTGCCTGCTAGTATAGTGAATCTTGGGCAGCTTGGGACTCTTGATCTTCATAACAATAAACTTTCAGGTGAGCTTCCCAAGGGAATTCGATCCTGGAAGAAACTCAATGAGCTTAATCTGGCAAATAATGAGATCGGTGGAAGTATTCCTGACGAAATTGGGAGTTTGTCCGTGCTAAATTTTCTTGATCTTTCCAATAATCAATTTTCCGGGAAAGTTCCTCTTGAATTGGAGAATTTGAAGCTCAATAGGTTAAATATGTCTTACAATCATCTCTCTGGAGAACTTCCTCCTCTGTTGGCGAAGGATATGTACATGACAAGTTTTCTGGGTAATCCTGGTCTGTGTGGCGATTGGAACAGTTTATGTAATGGCAGAGATGAAGCTAAGGCAAGAGGGTATTCTTGGTTGCTTCGAATTATTTTCATCATTGCTACTGTTGTCTTTGTTGTAGGCGTTGTCTGGTTTTATTTCAAGTATAAGAACTTTAGAAAGGCCAAAAGAGCCATTGACAAATCAAAATGGACATTGATGTCATTCCATAAACTGGGTTTCAGTGAAGATGAAATTCTGAGTTGCCTTGATGATGACAGTGTGATAGGTAGCGGATCATCTGGGAAAGTTTACAAGGTTGTTCTTAGCAATGGGGAGGCCGTTGCTGTAAAGAAGCTGTGGGTAGGCATAAAAAAAGACATGGAGAGTGAGGATATTGAAAAAGGTGGTGTTCAAGACAATGTTTTTGATGCTGAAGTTGAAACCTTGGGTAAAATTAGGCACAAAAACATAGTGAAGCTTTGGTGTTGCTGCACCACAAGGGACTGCAAGCTCCTAGTTTACGAGTACATGCCAAATGGCAGTCTCGGCGATTCACTTCATGGAAGTAAAGGTGGGTTGTTGGACTGGCCAACAAGGTATAAGATAGCCCTTGATGCTGCTGAAGGTCTCTCTTATCTGCATCATGACTGTGTTCCTCCAATTGTTCATAGAGATGTTAAATCCAACAATATCTTGTTGGATGGTGACTTTGGTGCGAGAGTGGCTGATTTTGGTGTAGCCAAGGTTGTTGAAACCAATGGGAAAGGAACCAAATCCATGTCTTTCATTGCCGGCTCTTGTGGATACATTGCGCCAGAATATGCATACACACTGAGGGTGAATGAGAAGAGCGACATATACAGCTTTGGTGTGGTGGTACTTGAGTTGGTGACCGGAAGGCGACCGGTTGAGCCAGAGTTTGGGGAAAAGGATTTGGTGAAGTGGGTTTACACCACCTTGGACCAGAAAGGAGTGGACCATGTGATCGACTCGAGGCTGGATTCTTGTTACAAAGATGACATATGCAAGGTTCTTGACATTGGCCTCATGTGCACTAGTTCTCTTCCCATCAACCGCCCTGCCATGAGAAGAGTGGTCAAGATGCTGCAAGAGATGGGCTCAGAGAACCAAACCAAGTCTATCAGGAAGGATGGCAAGTTGTCCCCTTATTACTGTGACGATGCCTCAGATCATGGGAGTGTAGCCTAA 2988 0.4705 MLPLFFLLCFLFPPPSVVSLNQDGLYLYKFKLSMNDPDSSLSSWNDGDAHPCSWSGVTCDPTNTSVTGLDLSSSNIAGPLPASILCNLTNLTTLILYNNSINDALPSEISLCRSLVRVDLAQNLLTGALPPILSDLPNLRYLDLTGNNFSGLIPDSFANFQKLEVLSLVYNLLEGTIPASLGNISSLKMLNLSYNPFSPGRIPPELGNLTNLEVMWLTQCNLVGVIPESFGRLKKLRDLDLALNNLDGSIPSSLIEMTSLKQIELYNNSLSGELPRGIGNLTALRLVDVAMNRLSGTIPDELCRLPLESLNLYQNQFEGELPESIADSPNLYELRLFANKLTGKLPGNLGKNAPLRWVDVSNNQFWGEIPATLCDNGKLEELLMIYNSFSGNIPPSLGRCRSLMRVRLGFNRLSGEVPAAIWGLPHVYLLELTHNSFSGSIAKSIAGAGNLSLLSLSKNNFTGQIPEEVGWLENLEEFSGDDNMFNGSLPASIVNLGQLGTLDLHNNKLSGELPKGIRSWKKLNELNLANNEIGGSIPDEIGSLSVLNFLDLSNNQFSGKVPLELENLKLNRLNMSYNHLSGELPPLLAKDMYMTSFLGNPGLCGDWNSLCNGRDEAKARGYSWLLRIIFIIATVVFVVGVVWFYFKYKNFRKAKRAIDKSKWTLMSFHKLGFSEDEILSCLDDDSVIGSGSSGKVYKVVLSNGEAVAVKKLWVGIKKDMESEDIEKGGVQDNVFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDSLHGSKGGLLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKVVETNGKGTKSMSFIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVVLELVTGRRPVEPEFGEKDLVKWVYTTLDQKGVDHVIDSRLDSCYKDDICKVLDIGLMCTSSLPINRPAMRRVVKMLQEMGSENQTKSIRKDGKLSPYYCDDASDHGSVA 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5516g00004 995 Gene3D Transferase(Phosphotransferase) domain 1 770 987 - -
Pral5516g00004 995 ProSiteProfiles Protein kinase domain profile. 682 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5516g00004 995 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 20 184 - -
Pral5516g00004 995 SMART serkin_6 682 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5516g00004 995 Gene3D Ribonuclease Inhibitor 182 306 IPR032675 -
Pral5516g00004 995 SUPERFAMILY RNI-like 68 415 - -
Pral5516g00004 995 FunFam Leucine-rich receptor-like protein kinase family protein 202 300 - -
Pral5516g00004 995 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Pral5516g00004 995 Gene3D Ribonuclease Inhibitor 307 614 IPR032675 -
Pral5516g00004 995 Gene3D Ribonuclease Inhibitor 20 181 IPR032675 -
Pral5516g00004 995 FunFam Receptor-like protein kinase HSL1 666 769 - -
Pral5516g00004 995 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Pral5516g00004 995 SUPERFAMILY RNI-like 346 605 - -
Pral5516g00004 995 FunFam Receptor-like protein kinase HSL1 306 613 - -
Pral5516g00004 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 229 964 - -
Pral5516g00004 995 SMART LRR_typ_2 184 209 IPR003591 -
Pral5516g00004 995 SMART LRR_typ_2 88 112 IPR003591 -
Pral5516g00004 995 SMART LRR_typ_2 496 520 IPR003591 -
Pral5516g00004 995 SMART LRR_typ_2 136 159 IPR003591 -
Pral5516g00004 995 SMART LRR_typ_2 233 257 IPR003591 -
Pral5516g00004 995 SMART LRR_typ_2 281 305 IPR003591 -
Pral5516g00004 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 770 979 - -
Pral5516g00004 995 SUPERFAMILY Protein kinase-like (PK-like) 679 963 IPR011009 -
Pral5516g00004 995 Pfam Protein kinase domain 685 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5516g00004 995 Gene3D Phosphorylase Kinase; domain 1 666 769 - -
Pral5516g00004 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Pral5516g00004 995 Pfam Leucine rich repeat 211 270 IPR001611 GO:0005515
Pral5516g00004 995 Pfam Leucine rich repeat 137 196 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5516g00004 Pral-Chr5516 31506 35214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5516g00004 15 995 Receptor kinase-like Gene Family AT1G28440 69.939 0.0 1408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral5516g00004 Pkinase 3.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5516g00004 - - gmx:100819887 1535.78