Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5516g00001 ATGGAGGCCGAGTCTGTGTCTGACGGGGAGAATAATCGGAAAAGGGACGCCGCTGATGAGTACAATGACAACAATAATGGAAGTAACAAAAAAATTGTAAATTCCAATGAAGGGCAGAGCAAGCCCAAGCGTCAGATGAAGACTCCTTTCCAGCTTGAGGCTCTGGAGAAAGCTTATGCTTTGGAGACGTACCCGTCGGAGGCGATGAGGGCAGAACTGTCGCAGAAGTTGGGGCTGTCGGATCGGCAATTGCAGATGTGGTTCTGCCATAGGAGGTTGAAAGACAAGAAGGACGTGCCCAAGTCTTCAAGAAAGGCGCCACCGCCGTTGCCCGCTTCACCGACGGACGAGTTGAGGATGGAGACTGAACTTGCCAATGATTATGGATCCGGGTCGGGTTCGGGCTCAAGCCCGTTTACTCGTTCAGAGTTGCGGAATGTAGTACCTAGGGGTGTTCCTGGGTACTATGAGTCGCAGCAGGCTCTTATGGAGCTCAGAGCAATTGCTTGTGTGGAGGCGCAGTTAGGAGAACCCTTAAGGGAGGATGGACCTATTTTAGGAATTGAGTTTGATCCATTGCCGCCAGATGCATTTGGAGCACCTATCGCAGTTAATGAGCAGCAGAAGCGGCCTAGTCTTGGCTTTGATAGTAAAGTCTATGAAAGACACGATGTTAGAACAAACAAGGCTATGACAAGGGCCTTCCATGAATATCCATTTCTCCCAAACCACTCCAGTATTAGATCTGATGCTTATGGACAATTGACACAATCTCATTTACTTGATCCGATGGATGGTCCAGCCAGAACTCCGTCTTTTGTAGTAAAAAATGAACAGCTTCCCAGGATTCATGCTGCCCAAGGCCATTCGTCACGTGTTCGTGTTTCATCTCTACAAGATAAGCAAGGGCTTCCCTTTCCGTCGCCCTCTCGTGATGATGATGGCCCTTCTCAAAGGGAATCTTACCCAAACCTAAATATTGGAATGAACTCTCACTTTACTGATCACCCAATTGTTGGACCAGAAAACCCTTATGGGGTAGTTGGTGGACAAATCTTCCCTAGCGATGCAATATTACGGGTTGACAGGAAACGAAAGAGTGATGATTCTAGAACTGCAAGAGAAGCTGAAGCCCATGAGATGAGGATCCAGAAGGAGATAGAGAAACAAGATAACATTAGGCGAAAGAATGAAGAGAGAATGAGGAAAGAGATGGAGAGGCAAGATCGTGAAAGAAGGAAGGAAGAAGAGAGGCTGATGCGTGAGAGACAGAGAGAAGAAGAAAGAACAAAGCGTGAGCAAAGACGTGAAATTGAACGAAGGGAAAAGTTTCTGATGAAGGAAAATTTAAGAGCTGAGAAAAGGAGGCAAAAAGAAGAGCTTCGAAAAGAGAAAGAAGCAGAGAGAAGAAAAGCTGCTCTTGAGAAGGCAGTTGCCCGCAGAATAGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAACTGGAATTGATGGAGTTGGCCGTAGCAAGCAAGGGACTTCCCTCAATTATAAATCTTGATCTTGACACCTTGCAAAACCTTGATATGTTTCGGGATTCATTGTGCACTTTTCCACCCAAGAGTGTAAAGCTGAAAAAACCATTTGCCATCCAACCCTGGATCAAATCTGAGGAGCATGTTGGCAACCTTCTCATGGTTTGGAGATTTCTGATTACATTTGCGGATGTCCTTGAGTTGTGGCCTTTTACTCTTGATGAATTTTTGCAGGCATTTCATGACTATGATTCAAGATTATTTGGTGAGATACATGTTGCTCTTCTCAAGGTGATAATAAAGGACATCGAAGATGTTGCAAGGACACCTACAGGATTAGGTACTAACCAGAATGGGGCTGCTAATCCTGGTGGTGGCCATCCAGAGATTGTGGAAGGGGCGTATGCCTGGGGCTTTGATATAAGAAATTGGCAGAAGCACTTGAATCAATCAACATGGCCAGAAATTTTCCGACAGTTAGCATTGTCTGCAGGGTTTGGACCACGGCTGAAAAAAAGAAATATCACATGGTCATATGCAAATGATAAAGATGAGGGTAGAAGTTGTGAAGACATCATCTCCACTCTTCGCAATGGTTCAGCAGCTGAAAATGCTGGCAAAATGCAAGAGAAAGGTCTGTTA 2157 0.4534 MEAESVSDGENNRKRDAADEYNDNNNGSNKKIVNSNEGQSKPKRQMKTPFQLEALEKAYALETYPSEAMRAELSQKLGLSDRQLQMWFCHRRLKDKKDVPKSSRKAPPPLPASPTDELRMETELANDYGSGSGSGSSPFTRSELRNVVPRGVPGYYESQQALMELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPIAVNEQQKRPSLGFDSKVYERHDVRTNKAMTRAFHEYPFLPNHSSIRSDAYGQLTQSHLLDPMDGPARTPSFVVKNEQLPRIHAAQGHSSRVRVSSLQDKQGLPFPSPSRDDDGPSQRESYPNLNIGMNSHFTDHPIVGPENPYGVVGGQIFPSDAILRVDRKRKSDDSRTAREAEAHEMRIQKEIEKQDNIRRKNEERMRKEMERQDRERRKEEERLMRERQREEERTKREQRREIERREKFLMKENLRAEKRRQKEELRKEKEAERRKAALEKAVARRIAKESMELIEDEQLELMELAVASKGLPSIINLDLDTLQNLDMFRDSLCTFPPKSVKLKKPFAIQPWIKSEEHVGNLLMVWRFLITFADVLELWPFTLDEFLQAFHDYDSRLFGEIHVALLKVIIKDIEDVARTPTGLGTNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKHLNQSTWPEIFRQLALSAGFGPRLKKRNITWSYANDKDEGRSCEDIISTLRNGSAAENAVXKMQEKGLL 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5516g00001 720 MobiDBLite consensus disorder prediction 22 46 - -
Pral5516g00001 720 MobiDBLite consensus disorder prediction 98 142 - -
Pral5516g00001 720 Coils Coil 393 478 - -
Pral5516g00001 720 SUPERFAMILY Homeodomain-like 31 97 IPR009057 -
Pral5516g00001 720 MobiDBLite consensus disorder prediction 290 304 - -
Pral5516g00001 720 SMART testlast3 551 610 IPR018501 -
Pral5516g00001 720 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Pral5516g00001 720 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 20 719 IPR044977 GO:0006357
Pral5516g00001 720 MobiDBLite consensus disorder prediction 127 142 - -
Pral5516g00001 720 MobiDBLite consensus disorder prediction 1 51 - -
Pral5516g00001 720 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Pral5516g00001 720 MobiDBLite consensus disorder prediction 1 21 - -
Pral5516g00001 720 Pfam DDT domain 552 607 IPR018501 -
Pral5516g00001 720 ProSiteProfiles DDT domain profile. 551 610 IPR018501 -
Pral5516g00001 720 CDD homeodomain 43 97 IPR001356 GO:0003677
Pral5516g00001 720 MobiDBLite consensus disorder prediction 283 338 - -
Pral5516g00001 720 Gene3D - 25 100 - -
Pral5516g00001 720 SMART HOX_1 40 102 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5516g00001 Pral-Chr5516 9 5479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5516g00001 7 720 Homeobox Transcription Factor Family AT1G28420 55.480 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral5516g00001 Homeodomain 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5516g00001 - - gmx:100777465 965.296