Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5515g00060 ATGGAGGCCGAGTCTGTGTCTGACGGGGAGAATAATCGGAAAAGGGACGCCGCTGATGAGTACAATGACAACAATAATGGAAGTAACAAAAAAATTGTAAATTCCAATGAAGGGCAGAGCAAGCCCAAGCGTCAGATGAAGACTCCTTTCCAGCTTGAGGCTCTGGAGAAAGCTTATGCTTTGGAGACGTACCCGTCGGAGGCGATGAGGGCAGAACTGTCGCAGAAGTTGGGGCTGTCGGATCGGCAATTGCAGATGTGGTTCTGCCATAGGAGGTTGAAAGACAAGAAGGACGTGCCCAAGTCTTCAAGAAAGGCGCCACCGCCGTTGCCCGCTTCACCGACGGACGAGTTGAGGATGGAGACTGAACTTGCCAATGATTATGGATCCGGGTCGGGTTCGGGCTCAAGCCCGTTTACTCGTTCAGAGTTGCGGAATGTAGTACCTAGGGGTGTTCCTGGGTACTATGAGTCGCAGCAGGCTCTTATGGAGCTCAGAGCAATTGCTTGTGTGGAGGCGCAGTTAGGAGAACCCTTAAGGGAGGATGGACCTATTTTAGGAATTGAGTTTGATCCATTGCCGCCAGATGCATTTGGAGCACCTATCGCAGTTAATGAGCAGCAGAAGCGGCCTAGTCTTGGCTTTGATAGTAAAGTCTATGAAAGACACGATGTTAGAACAAACAAGGCTATGACAAGGGCCTTCCATGAATATCCATTTCTCCCAAACCACTCCAGTATTAGATCTGATGCTTATGGACAATTGACACAATCTCATTTACTTGATCCGATGGATGGTCCAGCCAGAACTCCGTCTTTTGTAGTAAAAAATGAACAGCTTCCCAGGATTCATGCTGCCCAAGGCCATTCGTCACGTGTTCGTGTTTCATCTCTACAAGATAAGCAAGGGCTTCCCTTTCCGTCGCCCTCTCGTGATGATGATGGCCCTTCTCAAAGGGAATCTTACCCAAACCTAAATATTGGAATGAACTCTCACTTTACTGATCACCCAATTGTTGGACCAGAAAACCCTTATGGGGTAGTTGGTGGACAAATCTTCCCTAGCGATGCAATATTACGGGTTGACAGGAAACGAAAGAGTGATGATTCTAGAACTGCAAGAGAAGCTGAAGCCCATGAGATGAGGATCCAGAAGGAGATAGAGAAACAAGATAACATTAGGCGAAAGAATGAAGAGAGAATGAGGAAAGAGATGGAGAGGCAAGATCGTGAAAGAAGGAAGGAAGAAGAGAGGCTGATGCGTGAGAGACAGAGAGAAGAAGAAAGAACAAAGCGTGAGCAAAGACGTGAAATTGAACGAAGGGAAAAGTTTCTGATGAAGGAAAATTTAAGAGCTGAGAAAAGGAGGCAAAAAGAAGAGCTTCGAAAAGAGAAAGAAGCAGAGAGAAGAAAAGCTGCTCTTGAGAAGGCAGTTGCCCGCAGAATAGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAACTGGAATTGATGGAGTTGGCCGTAGCAAGCAAGGGACTTCCCTCAATTATAAATCTTGATCTTGACACCTTGCAAAACCTTGATATGTTTCGGGATTCATTGTGCACTTTTCCACCCAAGAGTGTAAAGCTGAAAAAACCATTTGCCATCCAACCCTGGATCAAATCTGAGGAGCATGTTGGCAACCTTCTCATGGTTTGGAGATTTCTGATTACATTTGCGGATGTCCTTGAGTTGTGGCCTTTTACTCTTGATGAATTTTTGCAGGCATTTCATGACTATGATTCAAGATTATTTGGTGAGATACATGTTGCTCTTCTCAAGGTGATAATAAAGGACATCGAAGATGTTGCAAGGACACCTACAGGATTAGGTACTAACCAGAATGGGGCTGCTAATCCTGGTGGTGGCCATCCAGAGATTGTGGAAGGGGCGTATGCCTGGGGCTTTGATATAAGAAATTGGCAGAAGCACTTGAATCAATCAACATGGCCAGAAATTTTCCGACAGTTAGCATTGTCTGCAGGGTTTGGACCACGGCTGAAAAAAAGAAATATCACATGGTCATATGCAAATGATAAAGATGAGCAGGGTAGAAGTTGTGAAGACATCATCTCCACTCTTCGCAATGGTTCAGCAGCTGAAAATGCTGTGGCAAAAATGCAAGAGAAAGGTCTGTTAGCCCCTCGGAGAAATAGGCACCGGTTGACTCCTGGAACGGTCAAGTTTGCAGCATTTCATGTTTTGTCTCTCGAGGGTGGCAAGGGCTTGACTGTACTAGAGCTTGCAGAGAAAATTCAGAAATCTGGACTTAGGGACCTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTGACCAGAGATGCTAAGCTTTTTGAAAGAATAGCTCCCTCAACATATCGAGTTCGAGCTGCATATCGAAAAGATCCTGCTGATGCAGAGGCCATTCTTTCAGATGCTAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCCTGCTGTTGAAGATGCTGATGATGTTGAAAGAGAAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGTAGATGATTTAGTAAACCCCCTAAGTGATAACAAAACATCTGAACAGTATGATGACCTGAACAATTGCTCTACAAATGGGGGAGAAAACATGAGCCATGACATGGAACTTGTTCAAAATGAGTTTGGCAAGGATCTTCCTTGCGTTCCTGAGAGTTGTTCTAAAGATGCTGATTGCCCAGGTGCTGTTACTGGACAGCAGGTTATTGAAGATTTGAATACTGCAAATCCTGACGATAACATGGAAATTGATGAAAGCAAGTCTGGAGAGTCATGGGTTCAAGGCCTTACAGAAGGAGAATATTCTGACCTTAGCGTAGAAGAACGTCTTAATGCACTAGTAGCATTAGTTGGTGTTGCGAATGAAGGAAATTCAATACGTCTTGTTCTTGAGGACCGTTTGGAGGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGGCAGAAAGATGATAATTCTAATAAATCAGATTTTCCATCTCTTGCTGCAAATAAAGTTGAGACACAATATACGGGCCCATCTGCAGAGGGAAACCAGAGCCCATTGCTTGACATCAATATTAATAATAATGAGGCATCACCCAGCACTGCAGAAAATCAAAAGGAAGTTCTGGGTGCACAGAACATGCCTATTGAAAAGCCCTCAGTAGTTCAAGATCTCTTTTTAGGTCCAGACAACCCGCAGATTCTATCTGCACATGCTTCAAAAAGGTCTCGTTCACAGTTGAAGTCTTATATTGCGCATATAGCGGAAGAGATGTATGTATATAGGTCCTTGCCCCTTGGTCAAGATAGGAGACGTAACCGATATTGGCAATTTGTTGCATCCGCTTCCAGCAGTGATCCTGGTGCCGGCAGGGTCTTCATGGAATTGCATGATGGCAGTTGGCGGCTTATTGATTCTGAAGAGGATTTCGATGCGCTCTTGACATCCCTCGATTCACGTGGAATTAGGGAATCTCATTTACGCTTAATGTTGCAGAAGATTGAGAATTCCTTCAAGGAAAATGTTCGAAAGAATGCTCAATTTAATAAAAATGCCACCAGATCAATTAAAAATGAAGCTGATGAAGTAGAATTGGTTCCTGAATGCCGTGCTGGATCAGACAGTTCTAGCAGTAGTCTCTGTGGTTTGAGTTCTGACTGTACATTGGAAACAACTTCATCATTTAAAATTGAGCTGGGGAGAAGTGAGAGTGAAAAAAAAGCTGCCTTGACCAAGTATCAAGATGTTCAAAAGTGGATATGGAAAGAATGTTATAATTCATCAACATTATGTTCATTGAAATATGGGCAAAGGAGATGCAAATCACTTCTGGAAATATGTGATATGTGTTTGAATCCATATTTCTTTGAGGATTCCCATTGTAATTTTTGCCACCATACTTTTGCTACTAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGAGAAGTTAGATTCCAAAGGTATTTCTACTTGGGATTGTTCTCTTCCCTTGCGGATAAGGTTGCTCAAGGCCTTCTTGGCTTGTATTGAGGCTTCTGTTCCTCTTGAATCATTGCAATCAATTTGGACAGAAGAGTATAGGAAGCAGTGGGGTGTGAAGCTGAGCAAATCATCTACAACTGATGAACTCTTGCAGTTATTGACCTTGTTGGAGAGAGCAGTACAGCGAGACTTTCTGTCATCAAACTTCTCCACAACAGAAGAAATGTTGGGATCAAGCTGTATGCCAGATGATGCTGTAAATGCTTCTACAGATACTGAATCAGTTCATGTGCTGCCATGGGTGCCACAAACCACTGCAGCTGTGTCGTTGAGAATCTTTGAATTTGATGCATCCATCAGTTACATACCAGTTGAGAAGCCTGAGCTACCTGTTGAGGAGAAAGAAGTGAGAGAATATGTGAAGCTTCCTTCAAGATATGCTCCCTTCAAGTCTGGTAGAGCTATTGAATCAGCAGAATTGGACCATGACGAATTCATCAAGGAAGACAAATCTAATAGAAGTGTTCGAAGGAGCAATAAACGTGGACGGGGGTCTCATGATCAGGGCCGGGGCAAGAAGTTGTCTAGAAGAACACAAGAGCCAAAACAACATGCTGGGCGCCGGAATGTTAAAGGCACTGAGAGTTTGGGTGCGGGATTAAAACAGCAGGGGAGAGGGACACAAGGACAACCTGGTGGACGTGGTCGCCGAACTGTCAGGAAAAGGAGAGTGGAAAAAAGGGCTGTTGAGGACTTATTACTTGGCCACAAGGGTGTCGGTCGTAGTCCCAAAATTGGCAGAGGATCATTGAGAAGCTTGGAAGAGGAATGGGATGGCGAGAAGGAAGCAAGTCCTATCCAAATGGATGGTGTTGATAACAGTAACAGTGCTGAGGAAGTGGAATCTGATGACAATGGACAAGCAGTGGAGTATGAGCAAGGAAACTGGGAGGTAGGTTTCAATGGTGGTAGTTCCAACAGATGGGATGGGGATATGGTTGGAGCGAGCGATGAAGAAGTGGTGGGTGCTTCTGAAGATGACAATGGCATTGAGGAGGGAGAAGAGGAGTTGGAAGAAGATTCAGAGGAGGAAGTTATGAGTGAAGGAGAGGATTCAGATGGTGATGCCAATAGAATGATGGTAAATGAAGAGGGCTCAGACTCAGCTGTCTCTGAGGATTCTTCTGATTAG 5250 0.4396 MEAESVSDGENNRKRDAADEYNDNNNGSNKKIVNSNEGQSKPKRQMKTPFQLEALEKAYALETYPSEAMRAELSQKLGLSDRQLQMWFCHRRLKDKKDVPKSSRKAPPPLPASPTDELRMETELANDYGSGSGSGSSPFTRSELRNVVPRGVPGYYESQQALMELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPIAVNEQQKRPSLGFDSKVYERHDVRTNKAMTRAFHEYPFLPNHSSIRSDAYGQLTQSHLLDPMDGPARTPSFVVKNEQLPRIHAAQGHSSRVRVSSLQDKQGLPFPSPSRDDDGPSQRESYPNLNIGMNSHFTDHPIVGPENPYGVVGGQIFPSDAILRVDRKRKSDDSRTAREAEAHEMRIQKEIEKQDNIRRKNEERMRKEMERQDRERRKEEERLMRERQREEERTKREQRREIERREKFLMKENLRAEKRRQKEELRKEKEAERRKAALEKAVARRIAKESMELIEDEQLELMELAVASKGLPSIINLDLDTLQNLDMFRDSLCTFPPKSVKLKKPFAIQPWIKSEEHVGNLLMVWRFLITFADVLELWPFTLDEFLQAFHDYDSRLFGEIHVALLKVIIKDIEDVARTPTGLGTNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKHLNQSTWPEIFRQLALSAGFGPRLKKRNITWSYANDKDEQGRSCEDIISTLRNGSAAENAVAKMQEKGLLAPRRNRHRLTPGTVKFAAFHVLSLEGGKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRAAYRKDPADAEAILSDARKKIQIFENGFPAVEDADDVEREEESESDEVDEDPEVDDLVNPLSDNKTSEQYDDLNNCSTNGGENMSHDMELVQNEFGKDLPCVPESCSKDADCPGAVTGQQVIEDLNTANPDDNMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSIRLVLEDRLEAANALKKQMWAEAQIDKVRQKDDNSNKSDFPSLAANKVETQYTGPSAEGNQSPLLDININNNEASPSTAENQKEVLGAQNMPIEKPSVVQDLFLGPDNPQILSAHASKRSRSQLKSYIAHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSSDPGAGRVFMELHDGSWRLIDSEEDFDALLTSLDSRGIRESHLRLMLQKIENSFKENVRKNAQFNKNATRSIKNEADEVELVPECRAGSDSSSSSLCGLSSDCTLETTSSFKIELGRSESEKKAALTKYQDVQKWIWKECYNSSTLCSLKYGQRRCKSLLEICDMCLNPYFFEDSHCNFCHHTFATNNGFNFSKHAFQCGEKLDSKGISTWDCSLPLRIRLLKAFLACIEASVPLESLQSIWTEEYRKQWGVKLSKSSTTDELLQLLTLLERAVQRDFLSSNFSTTEEMLGSSCMPDDAVNASTDTESVHVLPWVPQTTAAVSLRIFEFDASISYIPVEKPELPVEEKEVREYVKLPSRYAPFKSGRAIESAELDHDEFIKEDKSNRSVRRSNKRGRGSHDQGRGKKLSRRTQEPKQHAGRRNVKGTESLGAGLKQQGRGTQGQPGGRGRRTVRKRRVEKRAVEDLLLGHKGVGRSPKIGRGSLRSLEEEWDGEKEASPIQMDGVDNSNSAEEVESDDNGQAVEYEQGNWEVGFNGGSSNRWDGDMVGASDEEVVGASEDDNGIEEGEEELEEDSEEEVMSEGEDSDGDANRMMVNEEGSDSAVSEDSSD 1749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5515g00060 1749 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 941 981 IPR028942 -
Pral5515g00060 1749 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1117 1189 IPR028941 -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 22 46 - -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 283 327 - -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 1 49 - -
Pral5515g00060 1749 Coils Coil 393 478 - -
Pral5515g00060 1749 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 95 117 - -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 829 872 - -
Pral5515g00060 1749 ProSiteProfiles DDT domain profile. 551 610 IPR018501 -
Pral5515g00060 1749 CDD homeodomain 43 97 IPR001356 GO:0003677
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 834 857 - -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 389 435 - -
Pral5515g00060 1749 SMART HOX_1 40 102 IPR001356 GO:0003677
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 1028 1057 - -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 1693 1723 - -
Pral5515g00060 1749 Pfam DDT domain 552 607 IPR018501 -
Pral5515g00060 1749 Gene3D - 25 100 - -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 290 304 - -
Pral5515g00060 1749 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Pral5515g00060 1749 Pfam HB1, ASXL, restriction endonuclease HTH domain 733 801 IPR007759 GO:0006355
Pral5515g00060 1749 SMART testlast3 551 610 IPR018501 -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 1 21 - -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 1621 1638 - -
Pral5515g00060 1749 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 20 1749 IPR044977 GO:0006357
Pral5515g00060 1749 ProSiteProfiles HARE-type HTH domain profile. 733 802 IPR007759 GO:0006355
Pral5515g00060 1749 SUPERFAMILY Homeodomain-like 31 97 IPR009057 -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 1519 1749 - -
Pral5515g00060 1749 MobiDBLite consensus disorder prediction 1519 1562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5515g00060 Pral-Chr5515 233771 243726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5515g00060 7 1674 Homeobox Transcription Factor Family AT1G28420 50.057 0.0 1373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral5515g00060 WSD 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5515g00060 - - gmx:100777465 2201.02