Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5515g00027 ATGTCACTCTCAAAATCTCCGGTTGCTGCCGATGAGGATAGCGACCCATCGATTGAAATTGAAGTAGAGGAAGATCCCGAGGAAGAGGAAGATCCTGAGGAAGAAGAATACGAAGAAGTGGAAGTAGAGGAAGAAGTGGAGGAAGAGGAGGGGGAGGAAGAGGGAGCGCAAGATGAAGTAGAGGAGAAGGGAGAGGAAGAGGGAGAAGAGGAGGAAGTGGAGGTAGAGGAGGAGGAGGAGGAAGAAGTGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGCCAAATTTGCGGTGCCAGAACCTTCAGCAGATGCCGCTAAGGACCCTGAAGATTTGAGCCGACATATGGAATCTGAGGGGCAAGAGAGGAACTTCAGGCTAGTTTGTTGTGTGGCAGTAAACCCTGATACAGTGTCTGCAGAAAACAATGACTCCTATAAGGTTCTTACAGTGGAAAAAGAAGATTTTCGGCCAGAACATGTGACTCGAAGTAGTCCAAATTCAAGAAATAATGTGGGTACTGCTGAAGATGATAAACATCAAGGGCTAGATGTCGCTAATGAAAGTAAAGGATCCCCTCTACAATGTAAAACCTTTGAAGCCTACAACAAACCAAGTTGTGATAGCAAAGCTTACTTATGTGGTCTTAAAGAGTCTGGGACAGCCAAGTCATCCAATGATGCTGGAAAAGACATGGCTAAAAAAGATGTGGCTATTGACTTCCAGCAGAAAAGCTGCTGTGTTGAGGATGCTTACGTTGTCACTCAGAATTCTATAAACAAAATAAAGCAATCAGACGTGCATTCAGGGGATGAAACAAAGCAAATGACCTCAAGATTTACTTCCCCTGATATGAGGACGCAGAGTCTTTCTCCCTGTGCTGAGATGAAAGATGTAAACAAACGGCCAGCAATTATATGCAGCTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCATGTAGGTTTCTTCATATAAAAGATCATGTAAATAATACTGGCCAGCAGGCTGCAGGAGACTTGGTTTCTACAAATTGCAAGAGAGAAGGGCAACCGGAGGAAGGTCTGACCGGCAATGCTGAGACATCAGGAATGTCTGACGCTCCAGTTCCATTGGCTGCTTCATTGGCGAGCTCTTCTTTGCATTCTTCTGAATTTTCTCTAAAAGAGACCATCCGTAATGAGCAAGAAGCAAGCCCAAGTCAGCATCCATCTCAAGATAAACATAAGTTTCCATTACTTTTGCAAGAGGACTTGTCTTCTAAGAACCATGTCTTGCCAATTGGTAGAGACAGTTCTATATCCAGGGATCGATTGATCCTTGAAAACAGATCTAATTTTAACGCATCAAACAACTATTTCAGCAGGAATCGCTCTTATCCATCCTGCGTGGAGGGATTGGCTCCCATTGAAAACCAGCACGTGTACAACAAATATGTTTCCCAAGTTTCAGCTCCATCAAGTTATTCAATGTCTTCGAATTTATCTAATGGGGCAAATTCTTTGGATGCTCAAAAGCTGTTGAAAAGTGGCAAAGAATATCATGCTCCTACATCCACTTTCTTAGGTTCAGAATGGGAGGAGATGCCTCTAACTAGTTCATCCGGAGTTCAGCCACATGTCACTGGATATAAAAGAAAAATATCTTTTTATGATTGGGAGCCATCTGTACCTTTTCGGCCATCATTTTTTATTACTTCAGCCAGTATATCCTCTTCTGGTGACATGTATGATCCATTTCATCCTTGTGTTGAGATAACTAACATAGGAGATGGATCCTTGAAAGCTTCCATTTTTATTCACGGGCCTCCCATCCAGGCTTCATCTCATGTGCGGACATATGGTGATTGCCCTGGAGCTGGGGACAAGGTGGCTGATATCAATGACGACAAGAGTTCTGTTTCTTCTCATCACAGATTTTATGAGAATGAGGCAAACAAGAGTGGTGTTCCTTCGGAGAAAGATGACTGTGCACATGAAACAGAGACAACAGCCAGAACCTATCTAAACTCCTATAATGGTAAAGCAAGCATTGGAGAAAATACCCTTGCTGTTGAAGATAATACGAAAATTGAAGTTGAACAAACAGATAATGATGCTAGATATCGAGGTGAAGGATCAAAAAAGAGAAGAGTAGATATGGCTAAGAAAAACAATGAAATTAATGTTGATTTTCAGATCAATGGCAATATGCGGAATGATTCGAAGGCTCTAAAAGTTTTTCGTACAGCTCTTGTAGATTTAGTGAAGGAGTTGTTAAAACCATCTTGGCAAGAGGGTCATCTCAGCAAGGATGCACATAATACAATAGTTAAGAAATCAGTTGACAAAGTTATTAGCACCCTACAACCCCACCAGATTCCAGCCACCATAGATGCAGTTAGCCACTATGTTTCTTCATCTCGGTTGAAAATTGCCAAGCTTGTTGATGGATATGTCAATAAATACAGCAAGTCTTGA 2478 0.4249 MSLSKSPVAADEDSDPSIEIEVEEDPEEEEDPEEEEYEEVEVEEEVEEEEGEEEGAQDEVEEKGEEEGEEEEVEVEEEEEEEVEEEVEEEEEEEEEEEDAKFAVPEPSADAAKDPEDLSRHMESEGQERNFRLVCCVAVNPDTVSAENNDSYKVLTVEKEDFRPEHVTRSSPNSRNNVGTAEDDKHQGLDVANESKGSPLQCKTFEAYNKPSCDSKAYLCGLKESGTAKSSNDAGKDMAKKDVAIDFQQKSCCVEDAYVVTQNSINKIKQSDVHSGDETKQMTSRFTSPDMRTQSLSPCAEMKDVNKRPAIICSFFAKGWCIRGSSCRFLHIKDHVNNTGQQAAGDLVSTNCKREGQPEEGLTGNAETSGMSDAPVPLAASLASSSLHSSEFSLKETIRNEQEASPSQHPSQDKHKFPLLLQEDLSSKNHVLPIGRDSSISRDRLILENRSNFNASNNYFSRNRSYPSCVEGLAPIENQHVYNKYVSQVSAPSSYSMSSNLSNGANSLDAQKLLKSGKEYHAPTSTFLGSEWEEMPLTSSSGVQPHVTGYKRKISFYDWEPSVPFRPSFFITSASISSSGDMYDPFHPCVEITNIGDGSLKASIFIHGPPIQASSHVRTYGDCPGAGDKVADINDDKSSVSSHHRFYENEANKSGVPSEKDDCAHETETTARTYLNSYNGKASIGENTLAVEDNTKIEVEQTDNDARYRGEGSKKRRVDMAKKNNEINVDFQINGNMRNDSKALKVFRTALVDLVKELLKPSWQEGHLSKDAHNTIVKKSVDKVISTLQPHQIPATIDAVSHYVSSSRLKIAKLVDGYVNKYSKS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5515g00027 825 MobiDBLite consensus disorder prediction 352 374 - -
Pral5515g00027 825 MobiDBLite consensus disorder prediction 163 185 - -
Pral5515g00027 825 MobiDBLite consensus disorder prediction 110 127 - -
Pral5515g00027 825 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 312 331 IPR000571 GO:0046872
Pral5515g00027 825 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 25 824 - -
Pral5515g00027 825 Coils Coil 39 100 - -
Pral5515g00027 825 Gene3D - 302 358 - -
Pral5515g00027 825 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872
Pral5515g00027 825 MobiDBLite consensus disorder prediction 393 414 - -
Pral5515g00027 825 MobiDBLite consensus disorder prediction 271 294 - -
Pral5515g00027 825 MobiDBLite consensus disorder prediction 1 127 - -
Pral5515g00027 825 MobiDBLite consensus disorder prediction 393 407 - -
Pral5515g00027 825 MobiDBLite consensus disorder prediction 280 294 - -
Pral5515g00027 825 MobiDBLite consensus disorder prediction 14 101 - -
Pral5515g00027 825 ProSiteProfiles Zinc finger C3H1-type profile. 307 334 IPR000571 GO:0046872
Pral5515g00027 825 SMART c3hfinal6 307 333 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5515g00027 Pral-Chr5515 91249 96790 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5515g00027 zf-CCCH 7.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5515g00027 - - pcin:129306230 1115.52