Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5515g00024 ATGCCAGCCCAGAAGCGCTTGTTCGACGTACCAGAAGAGGGTGCTTTTCTCGGCGAGAGGAACCACCACGAGAAGCTAGAAGATGGAGTGGAATCCGATCGAAGCCCTTCGGAGAGCACCGGCGACAAAGAAGAGTTTGTTATTATAAAATTGTCAGATGTACGCAAGGAAGTCCAATGCCCTATCTGCCTAGGCATCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCACCGCTTTTGCAGGGAGTGTATAGACAAATCCATGCGCCTTGGCAACAATGAATGCCCTGCATGCCGCACACATTGTGCTAGCCGACGCTCACTGAGAGATGACCCAAACTATGATGCTTTAATTGCTGCTCTTTATCCAGATATAGACAAGTATGAACAGGAGGAATTGGCTCTGCATGAAGATGAAAAAGTTCGCAATAAGCAGATCCAAGAATCTATTGCTCAGACTCTTCAACGGCAAGCAGAAGCACTGGGTAAAAAACGCAATCCTAAAACGATTACAAGGAGGTCACAAGGTAGCTATCGAGCTTCACATGTGAGGGCGAGAAGAAACTGTAGAAGTACCATTGAACTTCAGGGATCTGATGACACTGAGGAAATGAATGATGATGATGGGGCTAAGGTTTCTTCTTCTGGTGATGAGCTAATAGAAACCAAACCAAAAAGATGTAAAAGAGGGGCAGAAGCACAATTTCCTCCGCATTCTGCAACTACTGTTGCAGATGGTGCTAGTGATGAAAATGCTCCTGAAGTAAGTAGAGAATTCCTGAGTCCTTCTAGTACACTTGCCTGGGGAAAAAATGGTCACCGGAGTCACACCCGAGTCAATGGCAAGAATGCCAGAAATAGTCGCCTTGCCAAATTGATTGATAATCTCCGTGTCTTGGAAGAAAACGATGATGAGTTGGGTGTCTGCCTCATGCTTGTGCCTTTTGATGAGAAAAGAATACCAAGTTTGCAGAAGCCATACCTCTGCTGCAGACCTACATTGTCTGTCAGGCACCTGTGCCAGTATGTTGCCCCTCAAATAGCTGTACAGGCTGATGAGGTTGAGATATGCTTGGTAAAAGAACAGCAAGCCAACATTATTACAGCTGCAGGCTCAGTAGACATGGGCAAAGATAATGTGCAAGTGTTGAGAGAGCAGGAAACGTTGGCCGAACTTAAACCTGATCATTTTAGCCGTGGCCATGTGCTTATGGCGTATAAGAGGAGGCTGTCGGACTCAACTGCGTCTAGCTCGAGGTGA 1263 0.4616 MPAQKRLFDVPEEGAFLGERNHHEKLEDGVESDRSPSESTGDKEEFVIIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEQEELALHEDEKVRNKQIQESIAQTLQRQAEALGKKRNPKTITRRSQGSYRASHVRARRNCRSTIELQGSDDTEEMNDDDGAKVSSSGDELIETKPKRCKRGAEAQFPPHSATTVADGASDENAPEVSREFLSPSSTLAWGKNGHRSHTRVNGKNARNSRLAKLIDNLRVLEENDDELGVCLMLVPFDEKRIPSLQKPYLCCRPTLSVRHLCQYVAPQIAVQADEVEICLVKEQQANIITAAGSVDMGKDNVQVLREQETLAELKPDHFSRGHVLMAYKRRLSDSTASSSR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5515g00024 420 MobiDBLite consensus disorder prediction 1 42 - -
Pral5515g00024 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 130 IPR013083 -
Pral5515g00024 420 MobiDBLite consensus disorder prediction 208 233 - -
Pral5515g00024 420 CDD RING-HC_RING1-like 57 122 - -
Pral5515g00024 420 MobiDBLite consensus disorder prediction 258 272 - -
Pral5515g00024 420 Coils Coil 283 303 - -
Pral5515g00024 420 MobiDBLite consensus disorder prediction 12 42 - -
Pral5515g00024 420 MobiDBLite consensus disorder prediction 158 283 - -
Pral5515g00024 420 SMART ring_2 60 99 IPR001841 -
Pral5515g00024 420 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Pral5515g00024 420 PANTHER OS11G0578200 PROTEIN 20 410 IPR044592 -
Pral5515g00024 420 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Pral5515g00024 420 SUPERFAMILY RING/U-box 46 131 - -
Pral5515g00024 420 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5515g00024 Pral-Chr5515 80077 84779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5515g00024 53 123 C3H Transcription Factor Family AT3G23060 33.784 2.01e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5515g00024 K10695 - qsa:O6P43_031861 517.309