Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5515g00021 ATGGAAAGAAGCGGAGAGGGAAAGAGGAGCTCCAAGTACAAGGTGGAGGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGATGAAGAGCTTGATGAGTTCAATTTAGGAGACGATGGGAGGAAGAAGATGAGAGATCTGTACAGCAAGGGAGGGTCGTCCTCATCAATGGCGCCTTCATGTCAGGTGGAAGGCTGTGACAGTGATCTGAGTGAGGCTAAGCACTACCATCGCCGCCATAAGGTCTGTGAGTTCCATGCCAAGGCTGCTTCTGTGCTCATTGCCGGCTTGCACCAAAGGTTTTGCCAACAATGCAGCAGGTTAAACCTCTTTCTTCCTTCGGAGAGGATTTTGGAGGAATGA 360 0.4972 MERSGEGKRSSKYKVEEEEEVEDEEEDEELDEFNLGDDGRKKMRDLYSKGGSSSSMAPSCQVEGCDSDLSEAKHYHRRHKVCEFHAKAASVLIAGLHQRFCQQCSRLNLFLPSERILEE 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5515g00021 119 Gene3D - 50 114 IPR036893 GO:0003677|GO:0005634
Pral5515g00021 119 MobiDBLite consensus disorder prediction 1 63 - -
Pral5515g00021 119 Pfam SBP domain 60 108 IPR004333 GO:0003677
Pral5515g00021 119 MobiDBLite consensus disorder prediction 17 33 - -
Pral5515g00021 119 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 107 IPR044817 GO:0003677
Pral5515g00021 119 MobiDBLite consensus disorder prediction 1 16 - -
Pral5515g00021 119 SUPERFAMILY SBT domain 58 110 IPR036893 GO:0003677|GO:0005634
Pral5515g00021 119 ProSiteProfiles Zinc finger SBP-type profile. 57 119 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5515g00021 Pral-Chr5515 67752 68949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5515g00021 50 114 SBP-box Gene Family AT1G02065 64.615 9.76e-26 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral5515g00021 SBP 7.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5515g00021 - - pcin:129316666 122.479