Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5515g00020 ATGTTGGGTAACTGTGAGAAAATGGTGGTCATCCCCCCGACGAATAACGAATGGCCACAGACAGGCGATCAAAAGATCTCGTCGATGGGTTCCGGTGGGATGACGACAATGGAGCAACCTTCAGGTCAGGAGCTTCAGCAGCAGCAACAATCTCTCAATTGTCCTCGTTGTGATTCAACCAACACTAAGTTCTGCTACTACAACAACTACAGCTTGTCTCAGCCAAGGCACTTCTGCAAATCTTGCAAGCGATATTGGACCAGAGGAGGCACTCTGAGAAATGTTCCTGTAGGAGGTGGGTGCAGGAAGAACAAGCGCGTGAAGCGCCAAACACCTTCTGCTTCTGATCAAACTCCTTCTTCTTCGTCTTCTTCTTCTCCTACTGCTGCTAATTCAAACCCTCCTTCTCAACCCCACATCGATAATCATGTCAATCCTCTGTTTTATGGGTTGCCTCGTAACTCTAATTCTGATATGAATCTTCCATTTCCAAGGTTCAATTCTGGGTACGATCATCTTCAGCCTCATCTGAATGCCCTGGGATTGGGATTTTCCTCTGCGTACACTTTAAACGATTCACTTTTTTCGAATTACAATTCCGTCTTTGGTAATTCGATCTTCGGTAGTTCTTCAACTGCCATATCCTCCCTCCTAAGCCCTAGTACTAATCTGCAGCAACAGAAGTTCATCAATGGAGGTGTGAAGGATGATGTTCTAGGCACCTGCACTTTCCAGGGCTTAGACCCACTAGAAGAGGTGAAAGTCGAAGAAGAAAGACCCAACCAGATCACTGAGCATGGGAGCTTGTTCGATTACTACTCACCTTATTATTGGAATGATCAGACAAATAATGTTGGTCCTTCAGTCGCTTCTATGATCGAGTAA 885 0.4554 MLGNCEKMVVIPPTNNEWPQTGDQKISSMGSGGMTTMEQPSGQELQQQQQSLNCPRCDSTNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTLRNVPVGGGCRKNKRVKRQTPSASDQTPSSSSSSSPTAANSNPPSQPHIDNHVNPLFYGLPRNSNSDMNLPFPRFNSGYDHLQPHLNALGLGFSSAYTLNDSLFSNYNSVFGNSIFGSSSTAISSLLSPSTNLQQQKFINGGVKDDVLGTCTFQGLDPLEEVKVEEERPNQITEHGSLFDYYSPYYWNDQTNNVGPSVASMIE 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5515g00020 294 Pfam Dof domain, zinc finger 50 106 IPR003851 GO:0003677|GO:0006355
Pral5515g00020 294 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 199 IPR045174 GO:0003700|GO:0006355
Pral5515g00020 294 MobiDBLite consensus disorder prediction 29 48 - -
Pral5515g00020 294 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Pral5515g00020 294 MobiDBLite consensus disorder prediction 111 140 - -
Pral5515g00020 294 MobiDBLite consensus disorder prediction 96 148 - -
Pral5515g00020 294 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5515g00020 Pral-Chr5515 52604 54586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5515g00020 1 269 C2C2-Dof Transcription Factor Family AT1G28310 40.741 1.16e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5515g00020 zf-Dof 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5515g00020 - - pcin:129304804 494.582