Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5514g00003 ATGGAGAACGTTCCAGGCACTTCGTCCAGATGCGATAGGAAAGTCATAGAGAGGAACCGAAGAAGCCAAATGAGGGCTCTTTACTCCAGGCTCAGCTCACTCGTCCCTCGTCAGACCTCCAAGGAGTTGATTTCACTGCCGGATCAGCTGGGTGAAGCCACGAACTACATAAAGAAGCTCCAGATAAAGTTGGAGAAGATGCAGGAGAAGAAGCTCAGCCTGATGGAAATCAACAACGAACCAGATATAAGCGTTAGCGGGAGACTAAGTTATAATAACAGAGGAATCATTAAGGGGTCGAAGTCCCCCAAAGTTGAGATTCACCAAATGGGTTCAACACTAGAGGTTTGTGTGATTACTGGGTTGGATTGCCAGTTCATTTTCAACGAGTTCATTCGCATTCTTCACGAGGAACAAGCTGACATTCTTAGCGCCAGCTATTCAGTCGTTCAAGATACGGTTTTTCATAACATTCACTGTCAGGTAGGAGAATGTGGTAACAGGGCTGGGAGGATATCGGAGAGATTAAGGAGGTTTGTGTATGGTTCTGGCGCTTTTGAAGAGAATGGCAATGGCTGCACCCTCTGGAATTCTGATGAATTACTGTATGAATAA 615 0.4569 MENVPGTSSRCDRKVIERNRRSQMRALYSRLSSLVPRQTSKELISLPDQLGEATNYIKKLQIKLEKMQEKKLSLMEINNEPDISVSGRLSYNNRGIIKGSKSPKVEIHQMGSTLEVCVITGLDCQFIFNEFIRILHEEQADILSASYSVVQDTVFHNIHCQVGECGNRAGRISERLRRFVYGSGAFEENGNGCTLWNSDELLYE 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5514g00003 204 SMART finulus 14 66 IPR011598 GO:0046983
Pral5514g00003 204 Pfam Helix-loop-helix DNA-binding domain 13 61 IPR011598 GO:0046983
Pral5514g00003 204 Coils Coil 50 77 - -
Pral5514g00003 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 75 IPR036638 GO:0046983
Pral5514g00003 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 60 IPR011598 GO:0046983
Pral5514g00003 204 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 181 - -
Pral5514g00003 204 Gene3D - 6 84 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5514g00003 Pral-Chr5514 18980 20133 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5514g00003 6 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.820 1.46e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5514g00003 HLH 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5514g00003 - - pcin:129305410 214.927