Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5514g00002 ATGGACAACATTCCAGCTTCTTCATCCGGAGGTGACAGAAAAGTCATCGAGAGGAACCGAAGAAGCCAAATGAGGGCTCTTTGCTCCCAGCTCAGCTCTCTCGTCCCTCGTCAATCCTCTGCGGAGGTGATTTCGTTGTCAGATCAGCTGGGTGAAGCCACGACCTACATAAAGAAGCTTCAGATAAAGTTGGAGAAGATGCAAGAGAGGAAGCTCAGCCTAATGGGAATCAACAACGAGCCAAATTTTAGTGGGAACCTAAGTAATAACGATGGAGGAATGATTATGGGTTCGAAATCGCCCAAAGTTGAGATTCACCAAATGGGATCAGCATTAGAGGTTTGTGTGATTACTGGCTTGGATTGCCAGTTCATTTTCAACGAGTTCGTTCGCATTCTTCACGAAGAACAAGCCGATGTGGTCAATGCGAGTTATTCAGTAGTTCAAGATACTGTTTTTCATACCATACACTGTCAGATTGGAGAATGTGGTAATAGAGCTGAAAGGATATCAGAGAGATTAAAGAGGTTTGCGTATGGTTCTGGCGCATTTTGA 555 0.445 MDNIPASSSGGDRKVIERNRRSQMRALCSQLSSLVPRQSSAEVISLSDQLGEATTYIKKLQIKLEKMQERKLSLMGINNEPNFSGNLSNNDGGMIMGSKSPKVEIHQMGSALEVCVITGLDCQFIFNEFVRILHEEQADVVNASYSVVQDTVFHTIHCQIGECGNRAERISERLKRFAYGSGAF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5514g00002 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 60 IPR011598 GO:0046983
Pral5514g00002 184 Pfam Helix-loop-helix DNA-binding domain 14 61 IPR011598 GO:0046983
Pral5514g00002 184 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 177 - -
Pral5514g00002 184 Coils Coil 50 70 - -
Pral5514g00002 184 Gene3D - 11 84 IPR036638 GO:0046983
Pral5514g00002 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 76 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5514g00002 Pral-Chr5514 13195 14161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5514g00002 5 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.081 3.23e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5514g00002 HLH 5.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5514g00002 - - pcin:129305410 220.705