Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5507g00026 ATGGAATCGGAGGATTCGGTGAAACTGCAATTGGAGGAATTGCAGAAACATTTGGGGAAGAAGCAAAAGTTTGAGGACGCTGTGTTCTCTCTCAAATCCCTCCTTCAACAAAAATATCCATCCGCTTCTCCCTCTCTCCGCAAATCTTTTTATACGGCTATATGCCGAGTTGCTACTGTATTGAAGACCAGGTATACCGCACCGGGTTTCTGGAATGCTGGGCTGGGGCTTTTTGAGCAGGCTGAATTGCTTGTTTCTGATCCATCTGAGAAGGAACACTTGAAGGGTTGCATTTCTCAGGCGAGGGGAGAGTTGCATCTAGAGGATAATCCGACACAAGCTTCACAACCAGCTCAGAATCCTGTGAATGGAGGGTATCTTTTTGAGGGACACCTTACTGTGGATCCCGAGCCTCCTCAGCCTCAATGGCTTGTGCAGTCAAACCTCTTGACAACAGCTGGTACACTTTTTTCTGCTGAATCATCTCAAGGTTTAGCGGCAGATGATCCTTCACGGGAAAATGCTGCAAATATGCTTCAGGATCTTCTGAATAGATTAGAAGATGCCGTGCCACTGATGCTGAGTGATGGTCCAGCGCCTCCAAAAGTCCCTCCTGCTAGCAAAGAAGTTGTGGCAAAACTTCCGGTCATTACTCTTACAGGGGAAATCCTGGCTAAGTTGGGGAAAGATGCCGAGTGTGCAATTTGCAAGGAAAACTTGGCTTTAAATGACAAAATGCAGGAGTTGCCATGCAAGCACACTTTCCACCCACCTTGTCTGAAGCCATGGCTGGACGAGCATAATTCATGCCCTATTTGTCGGTATGAGCTGCAAACTGATGACCATGCCTATGAGAGCTGGAAAGAACGCGAGAAGGAAGCAGAAGAAGAGAGAAAGGGTGCTGAAAATGCCGTTCGTGGTGGCGAATATATGTATGTTTAG 942 0.4713 MESEDSVKLQLEELQKHLGKKQKFEDAVFSLKSLLQQKYPSASPSLRKSFYTAICRVATVLKTRYTAPGFWNAGLGLFEQAELLVSDPSEKEHLKGCISQARGELHLEDNPTQASQPAQNPVNGGYLFEGHLTVDPEPPQPQWLVQSNLLTTAGTLFSAESSQGLAADDPSRENAANMLQDLLNRLEDAVPLMLSDGPAPPKVPPASKEVVAKLPVITLTGEILAKLGKDAECAICKENLALNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAVRGGEYMYV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5507g00026 313 MobiDBLite consensus disorder prediction 288 304 - -
Pral5507g00026 313 Coils Coil 284 304 - -
Pral5507g00026 313 MobiDBLite consensus disorder prediction 288 313 - -
Pral5507g00026 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Pral5507g00026 313 Pfam Ring finger domain 232 274 IPR001841 -
Pral5507g00026 313 FunFam E3 ubiquitin-protein ligase RNF181 195 280 - -
Pral5507g00026 313 CDD RING-H2_RNF126-like 232 274 - -
Pral5507g00026 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 277 - -
Pral5507g00026 313 SMART ring_2 233 273 IPR001841 -
Pral5507g00026 313 SUPERFAMILY RING/U-box 227 280 - -
Pral5507g00026 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 280 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5507g00026 Pral-Chr5507 144602 154858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5507g00026 7 313 C3H Transcription Factor Family AT5G20910 64.610 2.05e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5507g00026 K16274 - qsa:O6P43_015814 515.383