Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5507g00018 ATGGTGAAGCCATTAATGGCATCTCCGAATTCTGCGACTGTGAGCGATCATGAGGGTTTCAAGTACAAAGGCGTGAGGAAGCGAAAATGGGGCAAATGGGTATCTGAAATTAGACTTCCCAACAGCCGAGAACGCATATGGCTTGGTTCTTATGATTCTGCAGAGAAGGCTGCTCGAGCCTTCGATGCTGCACTCTTTTGTCTACGTGGTGAGCGTGCCAATTTCAACTTCCCTGATACTCCTTTCCTCTTTCATCTTCCTCCTCATCATCAATCTCTTACCCATCACCAGATTCAGCTTCTTGCTTCTTCCTTCGCCAAACAGCTCCACCAGGAGCCGCCGGCGGAGCCACCCCATGAAGAACCATCTGCAGAATTTCATTCTAGTCCTGTATCAGTGTCGGAGACAGGTTCCACCAGTACCTCATCGTCCTCCTGTATGCAAGTGGAAGTGGACCACAGTGACGACAGCCCCATAGATTGGTCATTTTTGAACTCGCTGGATTCTAATGACCTTGGTGCCATCGACGGGGGACTCTATTCTGAGTTAGATTACTTCCAGATTGGTGAGTCGACGTCCGAGTTATCTCTCATTCCCCCACCTGAGCCTTTCGACTACAATGCCCAAGAAAATCAATACGAAGATGCTTATTCTAACAATTCATTCCTTTGGAACTTCGGATAG 684 0.481 MVKPLMASPNSATVSDHEGFKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGERANFNFPDTPFLFHLPPHHQSLTHHQIQLLASSFAKQLHQEPPAEPPHEEPSAEFHSSPVSVSETGSTSTSSSSCMQVEVDHSDDSPIDWSFLNSLDSNDLGAIDGGLYSELDYFQIGESTSELSLIPPPEPFDYNAQENQYEDAYSNNSFLWNFG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5507g00018 227 FunFam Ethylene-responsive transcription factor 2 21 79 - -
Pral5507g00018 227 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Pral5507g00018 227 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Pral5507g00018 227 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Pral5507g00018 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 160 - -
Pral5507g00018 227 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Pral5507g00018 227 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Pral5507g00018 227 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Pral5507g00018 227 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Pral5507g00018 227 MobiDBLite consensus disorder prediction 127 147 - -
Pral5507g00018 227 MobiDBLite consensus disorder prediction 109 147 - -
Pral5507g00018 227 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5507g00018 Pral-Chr5507 103249 103932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5507g00018 21 226 AP2-EREBP Transcription Factor Family AT1G19210 43.204 4.00e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5507g00018 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5507g00018 - - pcin:129318518 328.176