Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5507g00016 ATGCCTTGGAATGAGCTGCAGCAATCTTCCAGGAGTGACTCACTGATTCAATTCAAATCAACAAGTGTTCTTCATCAGACCACCATGAACCTAACCGACACGACCCTTCCTGAATCACTCACCAGACCCAGGGCTTTGCATCTGCAACCTTTGGAGCCAATGACTCCTGTTTCATCTTTTCACGGTTCTGAACCAGCGGAAGGACGATCAAGTGCTCCTTTTGCTGGTCTCGTTATATGCGTAACCGGTCTATCTAAAGAAGCAAGGAAACAGGTCATGGAGGCGACAGAGAGATTAGGTGGCCAATATAGCCCCCATTTACATCCCCAGTGTACCCATTTGGTGGTTCAGAGCTTTGGTGGGCGTAAGTTTGAGCATGCACTGAAGTACGGCGCAAGAAATGGTCTTTTTATTGTCACACTGGGTTGGTTTGTCGATAGTGTTAGAAAAAATGTGAGGTTGAGTGAATCACTTTACAGTGTAAAGAATTATGGCAATAACAATACGAACTTGGATGATTATAAACTGCTTTCCGGGTATACGAATGCTGAAAATTCTTGTCTTCCTGCAAGTTTTCTTGAAAGCAAGCAAAATGATAAAGCTGAAGAATTTCAAAGATTTTCTGGGCGTGAGTCTACCAAGAATGTGGATCTGCCTTTGTCTGGTTGCTCGATATATGTGGATCCAGACATCTCACCTGAATTGCGAACTAAGGTTGTCGAGACTGCTTCCAGGGAAGGTGCCAGTTTGACTGAACAGTGGTTTGCTGGTTGTAATTCTAGTCATGTGGTCACTGAAGGGGCATCAATTCAAAGATATCTTGGATATTCTAGTAACTTTGTTACACCACTCTGGATTCTAAAAACAGCTAAAGAGAAACAAGTGCAAAGGCTTGTTCACATGTCTGCTGATTTGGCGAGGCAAGTGGGTTTGATGCTTGAGGACATTCATAATGGCGTTACAAAGGAGGAATCACTTAAGCATAATCTCTCTGAAGATCTTCAGGGCGTTAAAACCAAAGGAAGTTACAAAGAAAGGCAGCAAATTGTGAACTCTGCAAAAATAGATGTTAGAAATCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATGCGTCCTATAACACCTAACAACCTTCTGGATTCCATCTGCTGGTCAATATCTGAACCAACTTCAACAGCTTCGATTTACACTGACTCTTTCAGTGCTGAAGATCCTAGTGAAAATCATTTTTCAACCTTTTGTGATGCAAACGGGGTCGTCAAAGATTTAGAAGCTTCATTTTCAAACGGTACTCAACCTCTAAGAGAAAGTGAGAAATCTGAACTGATATTTAAAAACCATTTTCTTACCATTCTCTTTCCAATTGATCGATTTGCTGAGATGGGTCCTTCGTCAAGAACATTTTTCAGTCACAACGGTTTTACATGCCAGCAGGTGTTGGATCATATATATGCATTTTATCAGTTGTTTTATGGTGTGGTAGGAGAATCTGTTAGCCCATGA 1509 0.4201 MPWNELQQSSRSDSLIQFKSTSVLHQTTMNLTDTTLPESLTRPRALHLQPLEPMTPVSSFHGSEPAEGRSSAPFAGLVICVTGLSKEARKQVMEATERLGGQYSPHLHPQCTHLVVQSFGGRKFEHALKYGARNGLFIVTLGWFVDSVRKNVRLSESLYSVKNYGNNNTNLDDYKLLSGYTNAENSCLPASFLESKQNDKAEEFQRFSGRESTKNVDLPLSGCSIYVDPDISPELRTKVVETASREGASLTEQWFAGCNSSHVVTEGASIQRYLGYSSNFVTPLWILKTAKEKQVQRLVHMSADLARQVGLMLEDIHNGVTKEESLKHNLSEDLQGVKTKGSYKERQQIVNSAKIDVRNRRGRRMQTCQTPMRPITPNNLLDSICWSISEPTSTASIYTDSFSAEDPSENHFSTFCDANGVVKDLEASFSNGTQPLRESEKSELIFKNHFLTILFPIDRFAEMGPSSRTFFSHNGFTCQQVLDHIYAFYQLFYGVVGESVSP 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5507g00016 502 Gene3D BRCT domain 72 163 IPR036420 -
Pral5507g00016 502 ProSiteProfiles BRCT domain profile. 215 295 IPR001357 -
Pral5507g00016 502 SMART BRCT_7 217 293 IPR001357 -
Pral5507g00016 502 SMART BRCT_7 71 151 IPR001357 -
Pral5507g00016 502 ProSiteProfiles BRCT domain profile. 69 161 IPR001357 -
Pral5507g00016 502 Pfam twin BRCT domain 77 131 IPR001357 -
Pral5507g00016 502 SUPERFAMILY BRCT domain 71 162 IPR036420 -
Pral5507g00016 502 CDD BRCT_TopBP1_rpt2_like 73 151 - -
Pral5507g00016 502 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 47 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5507g00016 Pral-Chr5507 86504 93341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5507g00016 61 161 Core DNA Replication Machinery Family AT1G77320 38.614 7.28e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5507g00016 - - pcin:129318227 797.349