Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5506g00010 ATGGATTCGCGGAGCAGTCAGGGACGGAAGAAGGAACCTTGCAGAGAAGCCTGGACACCTGAGGAAGACAGGAAATTGGTCCAAGTCATTGAATCACATGGCCCCAAGAGGTGGAAGTTTATAGCAGCCAAAGCAGGTCTAAATCGATGTGGCAAGAGTTGCAGACTCAGATGGTTAAATTACCTTAGACCCAATATCAAGAGAGGCAATATATCAGACCAAGAAGAGGACTTAATACTCAGGCTTCACAAACTCCTAGGCAACAGGTGGTCTTTGATAGCTGGAAGGCTCCCAGGTCGAACTGATAATGAGATTAAGAATTACTGGAACTCTCATTTGAGCAAGAAGATAAGTCCAAGGAAACAAAACAGAGGTTTCAAAAAAGATTCCTCAGTGGAGATAACTACAGCGCCCGAGAAAGCTACAGTAATTAGTAGTAATGAAGAACAGGAGCCTAAGGTGGTGGAGAACTCGAAGCCTGGCTTTGTTGAAGACCACGAATTGTTCATTCCCTGTAGCAGCGAAGGACCGCTAAATTTGGAATGGGTGAGCAAGTTTCTGGAAATGGACGAAGCTTGGTTTGGATTTGCTGATCCGTGA 600 0.4517 MDSRSSQGRKKEPCREAWTPEEDRKLVQVIESHGPKRWKFIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKISPRKQNRGFKKDSSVEITTAPEKATVISSNEEQEPKVVENSKPGFVEDHELFIPCSSEGPLNLEWVSKFLEMDEAWFGFADP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5506g00010 199 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
Pral5506g00010 199 SMART sant 67 115 IPR001005 -
Pral5506g00010 199 SMART sant 14 64 IPR001005 -
Pral5506g00010 199 CDD SANT 72 113 IPR001005 -
Pral5506g00010 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 62 IPR017930 -
Pral5506g00010 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pral5506g00010 199 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pral5506g00010 199 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pral5506g00010 199 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pral5506g00010 199 Gene3D - 71 142 - -
Pral5506g00010 199 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 3 151 - -
Pral5506g00010 199 FunFam MYB-related transcription factor 14 67 - -
Pral5506g00010 199 CDD SANT 17 62 IPR001005 -
Pral5506g00010 199 Gene3D - 15 67 - -
Pral5506g00010 199 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5506g00010 Pral-Chr5506 43675 44802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5506g00010 8 162 MYB Transcription Factor Family AT5G40330 53.205 1.23e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5506g00010 Myb_DNA-binding 5.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5506g00010 K09422 - qsu:111997867 261.536