Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5506g00008 ATGGAGAAGAAAACAGCTAATGCAGGCGAAGTGTTGGTGGTGATCTCTGGGCAAGACTCCAAAGTGACTGAATGCAATGACGTCCATACTGGGCATGCTGCATCGAAGTCTCCACGTTTAAACGGCGCTTCTCCTGAAATACGGTTCAGTCCCAGCCCAAGGAAGCCGCCCAAACATCCTCTTGGCAGCGAAAACTTTGTACATAGAAAGTCGCTGACGAGGTCAGTGTATTCCAAACCCAAATCAAGATTTGGTGAACAACCTTATCCTGTTGATGCTACCTTGTTTGAGGATACCAATGATTTCACATTGCAAGAACAGTTGGCTGTTAATTCACCATGTAGATACTCATTCAACAAGGGTTCACCAAATAACAAATCCAGGGTGGTTAATAGAACAGCCTCCATAACCTCTACCATCACTCCCAAGACACCCTTCACGGCATCTCCAGGGCCTGCGGGAGAGGATGAGGATGAAATCTTTTATAGGAAAGTTGAATTGAGTAAAGGGAGGCGCAAGAGAGTAACCACGATGGTTTTGATCGAGTGGATTGTATTTGTATGCATGATGGGGTGCCTAGTGGTGAGCTTGACTGTTGATAAACTGAAAAACACAATCATTTGGGGTTTGGAGTTTTGGAAATGGTGTGTGCTTGTGTTGGTGATCTTTTGTGGCATGTTAGTCACAAACTGGATAATGCACATCATTGTGTTCTTGATTGAACTGAACTTTTTGCTGAGGAAAAAGGTGCTATATTTTGTTCATGGACTGAAGAAGAGTGTTCAGGTCTTTATCTGGCTGGGTTTGATTCTTCTCGCTTGGGTTCTGTTAATCAATCATAGGGCCCAGCGGTCTGAACTCGCCACAAAAATTTTGAATGGTGTAACGCAGACTCTAATTTCTCTTCTCATTGGAGCATTCTTATGGTTCTTTAAGACATTGTCTTTAAAGATATTAGCATCAAAGTTCCATGTCAGATCTTTCTTTGATAGAATTCAAGAATCAATCTTTCATCAGTATGTCCTGCAGACACTATCAGGGCCTCCACTCATAGAGGAGGCAGAGAAGGTAGGGAGATCACCTAGTATTGGTCAATTTAGTTTTAGGAGTACAAAAAGCAAAGGAGGCATAAAGAAAGAGGTCATTGATGTGGCAAAGCTTCACAAGATGAAACAAGAGAAGGTTTCTGCTTGGACCATGAAGATTTTGGTTGATGCAGTGACAAATTCAAGGTTGTCGACTATCTCTAATGCACTAGATGAAACTTTTGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGTTGCTGCCTATCACATTTTCAGAAATGTTGCCAGCCCTGGTTCCTTGTACATTGATGAGGATGACCTTCGGAGGTTCATGATTAAGGAAGAAGTGAATCTGGTGTTTCCCCTGTTTGATGGAGCAGAAACTGGACGAATTGACAGAAAGGCCCTAACAAGTTGGGTGTTGAGGGTTTATCAGGAGCGCAAAGCATTGGCACATGCCTTGGGTGACACCAAAACAGCAGTGAAACAGTTAAGCAAGCTAGTGACAGGGATTCTGGTGGTCGTGACCATAGTAGTGTGGCTTCTTCTGATGGAAATTGCCACTACAAAAGTACTTTTGTTCTTCTCATCACAGCTAGTACTCGTTGCTTTCATGTTTGGGAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTGATGCATCCCTTTGATGTAGGTGATCGATGTGCTGTTGATGGTGTTCAGCTACTGGTTGAAGAAATGAATATATTGACAACGGTCTTCTTGAAGCTTGATAACGAAAAGGTGTATTATCCAAACTCAGTTCTAGCCACGAAACCCATAAGCAATTATTACAGAAGTCCAGATATGGGAGACACTGTAGAGTTCTGTGTTGACTTCATGACACCATTGGAGAAGATTGGGGCTGTGAAAGAGAAAATAAAGAGGTATTTCGAGAGAAATCCACAACATTGGCATCCTAATCACATGGTTGTAGTAAAGGAGATTGAAAATGTGAACAAGATAAAGATGGCTCTGTATGTAACCCACACAATGAACTTCCAAGAGTGGACGGTGAAGAACAAGCGAAGAAGTGAACTGGTGATGGAAATCAAGAAGATATTTGAAGAGCTCAGCATCAGATACAATCTTCTTCCGCAGGCGGTTCATCTCCGTAATGCTGGATCTGATGCGTCTGTGCTCGCGAGATGA 2241 0.4235 MEKKTANAGEVLVVISGQDSKVTECNDVHTGHAASKSPRLNGASPEIRFSPSPRKPPKHPLGSENFVHRKSLTRSVYSKPKSRFGEQPYPVDATLFEDTNDFTLQEQLAVNSPCRYSFNKGSPNNKSRVVNRTASITSTITPKTPFTASPGPAGEDEDEIFYRKVELSKGRRKRVTTMVLIEWIVFVCMMGCLVVSLTVDKLKNTIIWGLEFWKWCVLVLVIFCGMLVTNWIMHIIVFLIELNFLLRKKVLYFVHGLKKSVQVFIWLGLILLAWVLLINHRAQRSELATKILNGVTQTLISLLIGAFLWFFKTLSLKILASKFHVRSFFDRIQESIFHQYVLQTLSGPPLIEEAEKVGRSPSIGQFSFRSTKSKGGIKKEVIDVAKLHKMKQEKVSAWTMKILVDAVTNSRLSTISNALDETFEQTDKEITNEMEATVAAYHIFRNVASPGSLYIDEDDLRRFMIKEEVNLVFPLFDGAETGRIDRKALTSWVLRVYQERKALAHALGDTKTAVKQLSKLVTGILVVVTIVVWLLLMEIATTKVLLFFSSQLVLVAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCAVDGVQLLVEEMNILTTVFLKLDNEKVYYPNSVLATKPISNYYRSPDMGDTVEFCVDFMTPLEKIGAVKEKIKRYFERNPQHWHPNHMVVVKEIENVNKIKMALYVTHTMNFQEWTVKNKRRSELVMEIKKIFEELSIRYNLLPQAVHLRNAGSDASVLAR 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5506g00008 746 PIRSF Memb_At2g17000 16 745 IPR016688 -
Pral5506g00008 746 SUPERFAMILY Sm-like ribonucleoproteins 568 627 IPR010920 -
Pral5506g00008 746 MobiDBLite consensus disorder prediction 27 64 - -
Pral5506g00008 746 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 31 737 IPR016688 -
Pral5506g00008 746 Pfam Mechanosensitive ion channel 519 724 IPR006685 GO:0016020|GO:0055085
Pral5506g00008 746 Gene3D - 578 627 IPR023408 -
Pral5506g00008 746 FunFam Predicted mechanosensitive ion channel 578 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5506g00008 Pral-Chr5506 32407 35585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5506g00008 16 734 Mechanosensitive Ion Channel Family AT5G12080 60.989 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5506g00008 K22048 - qsa:O6P43_019135 1082.4