Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5506g00007 ATGGATGGCGATAATAGGAATCAAGTTCCAAAACCAGGCGAAGCAAGCAGGATGGAGAAGAAAACAGCTAATGCAGGCGAAGTGTTGGTGGTGATCTCTGGGCAAGACTCCAAAGTGACTGAATGCAATGACGTCCATACTGGGCATGCTGCATCGAAGTCTCCACGTTTAAACGGCGCTTCTCCTGAAATACGGTTCAGTCCCAGCCCAAGGAAGCCGCCCAAACATCCTCTTGGCAGCGAAAACTTTGTACATAGAAAGTCGCTGACGAGGTCAGTGTATTCCAAACCCAAATCAAGATTTGGTGAACAACCTTATCCTGTTGATGCTACCTTGTTTGAGGATACCAATGATTTCACATTGCAAGAACAGTTGGCTGTTAATTCACCATGTAGATACTCATTCAACAAGGGTTCACCAAATAACAAATCCAGGGTGGTTAATAGAACAGCCTCCATAACCTCTACCATCACTCCCAAGACACCCTTCACGGCATCTCCAGGGCCTGCGGGAGAGGATGAGGATGAAATCTTTTATAGGAAAGTTGAATTGAGTAAAGGGAGGCGCAAGAGAGTAACCACGATGGTTTTGATCGAGTGGATTGTATTTGTATGCATGATGGGGTGCCTAGTGGTGAGCTTGACTGTTGATAAACTGAAAAACACAATCATTTGGGGTTTGGAGTTTTGGAAATGGTGTGTGCTTGTGTTGGTGATCTTTTGTGGCATGTTAGTCACAAACTGGATAATGCACATCATTGTGTTCTTGATTGAACTGAACTTTTTGCTGAGGAAAAAGGTGCTATATTTTGTTCATGGACTGAAGAAGAGTGTTCAGGTCTTTATCTGGCTGGGTTTGATTCTTCTCGCTTGGGTTCTGTTAATCAATCATAGGGCCCAGCGGTCTGAACTCGCCACAAAAATTTTGAATGGTGTAACGCAGACTCTAATTTCTCTTCTCATTGGAGCATTCTTATGGTTCTTTAAGACATTGTCTTTAAAGATATTAGCATCAAAGTTCCATGTCAGATCTTTCTTTGATAGAATTCAAGAATCAATCTTTCATCAGTATGTCCTGCAGACACTATCAGGGCCTCCACTCATAGAGGAGGCAGAGAAGGTAGGGAGATCACCTAGTATTGGTCAATTTAGTTTTAGGAGTACAAAAAGCAAAGGAGGCATAAAGAAAGAGGTCATTGATGTGGCAAAGCTTCACAAGATGAAACAAGAGAAGGTTTCTGCTTGGACCATGAAGATTTTGGTTGATGCAGTGACAAATTCAAGGTTGTCGACTATCTCTAATGCACTAGATGAAACTTTTGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGTTGCTGCCTATCACATTTTCAGAAATGTTGCCAGCCCTGGTTCCTTGTACATTGATGAGGATGACCTTCGGAGGTTCATGATTAAGGAAGAAGTGAATCTGGTGTTTCCCCTGTTTGATGGAGCAGAAACTGGACGAATTGACAGAAAGGCCCTAACAAGTTGGGTGTTGAGGGTTTATCAGGAGCGCAAAGCATTGGCACATGCCTTGGGTGACACCAAAACAGCAGTGAAACAGTTAAGCAAGCTAGTGACAGGGATTCTGGTGGTCGTGACCATAGTAGTGTGGCTTCTTCTGATGGAAATTGCCACTACAAAAGTACTTTTGTTCTTCTCATCACAGCTAGTACTCGTTGCTTTCATGTTTGGGAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTGATGCATCCCTTTGATGTAGGTGATCGATGTGCTGTTGATGGTGTTCAGCTACTGGTTGAAGAAATGAATATATTGACAACGGTCTTCTTGAAGCTTGATAACGAAAAGGTGTATTATCCAAACTCAGTTCTAGCCACGAAACCCATAAGCAATTATTACAGAAGTCCAGATATGGGAGACACTGTAGAGTTCTGTGTTGACTTCATGACACCATTGGAGAAGATTGGGGCTGTGAAAGAGAAAATAAAGAGGTATTTCGAGAGAAATCCACAACATTGGCATCCTAATCACATGGTTGTAGTAAAGGAGATTGAAAATGTGAACAAGATAAAGATGGCTCTGTATGTAACCCACACAATGAACTTCCAAGAGTGGACGGTGAAGAACAAGCGAAGAAGTGAACTGGTGATGGAAATCAAGAAGATATTTGAAGAGCTCAGCATCAGATACAATCTTCTTCCGCAGGCGGTTCATCTCCGTAATGCTGGATCTGATGCGTCTGTGCTCGCGAGATGA 2292 0.4245 MDGDNRNQVPKPGEASRMEKKTANAGEVLVVISGQDSKVTECNDVHTGHAASKSPRLNGASPEIRFSPSPRKPPKHPLGSENFVHRKSLTRSVYSKPKSRFGEQPYPVDATLFEDTNDFTLQEQLAVNSPCRYSFNKGSPNNKSRVVNRTASITSTITPKTPFTASPGPAGEDEDEIFYRKVELSKGRRKRVTTMVLIEWIVFVCMMGCLVVSLTVDKLKNTIIWGLEFWKWCVLVLVIFCGMLVTNWIMHIIVFLIELNFLLRKKVLYFVHGLKKSVQVFIWLGLILLAWVLLINHRAQRSELATKILNGVTQTLISLLIGAFLWFFKTLSLKILASKFHVRSFFDRIQESIFHQYVLQTLSGPPLIEEAEKVGRSPSIGQFSFRSTKSKGGIKKEVIDVAKLHKMKQEKVSAWTMKILVDAVTNSRLSTISNALDETFEQTDKEITNEMEATVAAYHIFRNVASPGSLYIDEDDLRRFMIKEEVNLVFPLFDGAETGRIDRKALTSWVLRVYQERKALAHALGDTKTAVKQLSKLVTGILVVVTIVVWLLLMEIATTKVLLFFSSQLVLVAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCAVDGVQLLVEEMNILTTVFLKLDNEKVYYPNSVLATKPISNYYRSPDMGDTVEFCVDFMTPLEKIGAVKEKIKRYFERNPQHWHPNHMVVVKEIENVNKIKMALYVTHTMNFQEWTVKNKRRSELVMEIKKIFEELSIRYNLLPQAVHLRNAGSDASVLAR 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5506g00007 763 MobiDBLite consensus disorder prediction 1 21 - -
Pral5506g00007 763 MobiDBLite consensus disorder prediction 1 26 - -
Pral5506g00007 763 PIRSF Memb_At2g17000 6 762 IPR016688 -
Pral5506g00007 763 Pfam Mechanosensitive ion channel 536 741 IPR006685 GO:0016020|GO:0055085
Pral5506g00007 763 SUPERFAMILY Sm-like ribonucleoproteins 585 644 IPR010920 -
Pral5506g00007 763 MobiDBLite consensus disorder prediction 41 81 - -
Pral5506g00007 763 Gene3D - 595 644 IPR023408 -
Pral5506g00007 763 FunFam Predicted mechanosensitive ion channel 595 644 - -
Pral5506g00007 763 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 10 754 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5506g00007 Pral-Chr5506 32407 35585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5506g00007 33 751 Mechanosensitive Ion Channel Family AT5G12080 60.989 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5506g00007 K22048 - qsa:O6P43_019135 1087.4