Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5505g00030 ATGTCGACGGTATACGTGTTAGAACCGCCGACGAAAGGGAAGGTGGTGCTGAACACAACCCATGGTCCGCTCGACATTGAGCTATGGCCCAAGGAAGCACCCAAGGCTGTCAGGAACTTCGTGCAGCTCTGCCTTGATGGTTATTACGTTAACACCAGCTTTCATCGTATCATCAAGGACTTCCTTATACAAGGTGGCGATCCCACTGGCAGCGGCACAGGGGGTGAGAGTATTTATGGGGGTGTCTTCTCTGATGAATTTCATTCACGTCTAAGATTTAAACATAGAGGATTGGTTGCGATGGCAAATGCGGGGTCACCACACTCCAATGGGAGTCAGTTTTTCATAACTCTGGATCGTTGCGATTGGCTTGATCGGAAGCATACAATTTTTGGAAAGGTGACGGGAGATACATTATACAATCTTTTGAGATTGGGCGAACTTGAAACTGATAAGAATGATCGCCCTCTGGATCCCCCGAAAATATTATCAGTTGAGGTATTATGGAACCCATTCGATGATATTGTTCCAAGAACAATTCAGCCTCAGATCCAAGCTAGTACTGATATGGAAAGTAAAGATTCAAAGAAAAAAGCTGTAAAAAAACTGAACTTACTTTCATTTGGAGAAGAAGCTGAAGAAGAGGAAAAGGAGCTGGCATCTGTAAAACAAAAGATTAAGAGCAGTCATGATGTATTGAATGATCCTCGTCTTCTGAAGGAACCAATTCCTAATAATGAACTGGGCTCATCAGGTGGCAAGTCGATGAGAGATTTGCAGTTATCTGTAAGGGATGCATTGAGCTCAAAGAAAGAAGAGTCTCAGAAAAAATCAGAAGCCAACCTTGATGACATTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGGCGGACTTTGATGCCAGAATGCGGAGTCAAATACTTAAAAAGCGCCAAGAGTTAGGGGATTTACCACCCAAGCCAAAGTTGCAAAACGGAAGCTCAAGTCCAAAGAACCCCAATTCATCAGCGATCAGGTCCAATGCTGTAAGTGTTGATGATGATCAACCTAGGGTGGAAAAATTGTCCATGAAGAAAAAGGGAATAGGATCTGAAGCAAGAGCTGAACGAATGGCAAATGCAGATGTAGATTTGCAGCTGTTCAATGAATCTGAGAAAAATAGACAGTTGCGGAAGCAGAAGAAACGCAGAGTTCAAGGACGTGAAGATGAGGTTCTAGCAAAACTAGAGAAATTTAAGACGGCTCTATCGGAAAAGACCACACCCTCAGCCTCAACCGATGGTCCAGTAGTTGTAAATGAAGAGGATGTGTCGGACTGGAAAGGAGGTGGCTTAAAATTTGCGCCTGAGTCTGGCAAGGATCGGATGTCACGCAACGATGACCCCAACGACTATGTTGTGGTTGACCCCCTTTTGGAGAAGGGTAAAGAGAAGTTCAATAGGATGCAAGCTAAACAAAAGAAGCGAGAGCGAGAGTGGGCTGGAAAATCCCTTACTTGA 1512 0.4392 MSTVYVLEPPTKGKVVLNTTHGPLDIELWPKEAPKAVRNFVQLCLDGYYVNTSFHRIIKDFLIQGGDPTGSGTGGESIYGGVFSDEFHSRLRFKHRGLVAMANAGSPHSNGSQFFITLDRCDWLDRKHTIFGKVTGDTLYNLLRLGELETDKNDRPLDPPKILSVEVLWNPFDDIVPRTIQPQIQASTDMESKDSKKKAVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEPIPNNELGSSGGKSMRDLQLSVRDALSSKKEESQKKSEANLDDIDDDDDDDDDDDDDDEADFDARMRSQILKKRQELGDLPPKPKLQNGSSSPKNPNSSAIRSNAVSVDDDQPRVEKLSMKKKGIGSEARAERMANADVDLQLFNESEKNRQLRKQKKRRVQGREDEVLAKLEKFKTALSEKTTPSASTDGPVVVNEEDVSDWKGGGLKFAPESGKDRMSRNDDPNDYVVVDPLLEKGKEKFNRMQAKQKKREREWAGKSLT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5505g00030 503 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Pral5505g00030 503 Coils Coil 205 232 - -
Pral5505g00030 503 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 217 IPR044666 -
Pral5505g00030 503 MobiDBLite consensus disorder prediction 350 373 - -
Pral5505g00030 503 CDD cyclophilin_CeCYP16-like 8 179 - -
Pral5505g00030 503 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 179 - -
Pral5505g00030 503 MobiDBLite consensus disorder prediction 264 282 - -
Pral5505g00030 503 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Pral5505g00030 503 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Pral5505g00030 503 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Pral5505g00030 503 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Pral5505g00030 503 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Pral5505g00030 503 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Pral5505g00030 503 MobiDBLite consensus disorder prediction 303 321 - -
Pral5505g00030 503 MobiDBLite consensus disorder prediction 420 503 - -
Pral5505g00030 503 MobiDBLite consensus disorder prediction 474 503 - -
Pral5505g00030 503 MobiDBLite consensus disorder prediction 233 373 - -
Pral5505g00030 503 SUPERFAMILY Cyclophilin-like 14 180 IPR029000 -
Pral5505g00030 503 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Pral5505g00030 503 Gene3D - 2 182 IPR029000 -
Pral5505g00030 503 MobiDBLite consensus disorder prediction 326 347 - -
Pral5505g00030 503 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5505g00030 Pral-Chr5505 121870 126223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5505g00030 9 172 U-box Gene Family AT5G67530 50.000 6.80e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5505g00030 K12737 - gmx:100793148 730.709