Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5505g00021 ATGGCTGGGGTGAGAGTGAAAGTGGAAGAAACGGTGGCATGTGGAGCTGGTTCGTCATCTTCGCCTTCATCTTCTGCTTCGAGTCTCTCTCCTCGCCCTATGGAGGGGCTGCACGAGATGGGGCCTCCTCCATTTCTTACCAAGACCTTTGAGATGGTGGAAGACCCATCCACCGACCCTGTTGTTTCTTGGAGCCGTGCTCGTAACAGCTTCATTGTCTGGGACTCTCACAAGTTCTCCACCACCATTCTTCCTCGCTACTTCAAGCACGGCAACTTTTCCAGCTTCATTCGCCAGCTCAACACATATGGATTTAGAAAAGTTGATCCTGATCGCTGGGAATTTGCAAACGAAGGGTTTTTGAGTGGACAGAAGCACTTATTGAAGACAATCAAGAGAAGAAGAAATGTGTCGCAGAGTGTACAGCAAGAACGGGGTGTTGCTTGTGTTGAAGTGGGGCAATACGGATTTGAAGGCGAGCTCGACAGGCTGAGGAGAGACAGGACGGTGATCATGACCGAAATTGTGAAATTGAGACAGCAGCAGCAGAATTCGCGGGCGCAACTGATTGCGATGGAGGAAAGATTACAGTCCACGGAGAAGAAACAGCAACAGATCCTCACTTTCCTTGCCAAAGCACTGAACAACCCCACTTTTATACAACAATTTGCCCAGAGAAACGCCCAAAACAAAGAATTACTTGGTGTTGATATGAGGCGAAAGAGGAGACTAACTGCTAGCCCGAGTGTGGAGAATTTACAGGATGATTCTGTGACGGTGGCAGTGCCTAGTGAACCAGTGGTGGACTATTCCACAAATGAAGAGGAAGAACTGGCAACGATAGAATCTGAGATAGAGACTTTTTTCTCAGCTCCTCACGATAATGAGTCAAGCAGTGACAAGAAAGAGCCAGCATCAAGTTCAATTCCTACAGCTAGCGGGAGCAACCTGGGTTCAGTGAGTGACGCAATTTGGGAGGACTTGCTGAACGAAGACTTAGTTCACGGCAATCCGGAGGAGGAAATCATATTTGGCTTGTGTCCACAAGGAGACGAAGTTGTGTAG 1065 0.4836 MAGVRVKVEETVACGAGSSSSPSSSASSLSPRPMEGLHEMGPPPFLTKTFEMVEDPSTDPVVSWSRARNSFIVWDSHKFSTTILPRYFKHGNFSSFIRQLNTYGFRKVDPDRWEFANEGFLSGQKHLLKTIKRRRNVSQSVQQERGVACVEVGQYGFEGELDRLRRDRTVIMTEIVKLRQQQQNSRAQLIAMEERLQSTEKKQQQILTFLAKALNNPTFIQQFAQRNAQNKELLGVDMRRKRRLTASPSVENLQDDSVTVAVPSEPVVDYSTNEEEELATIESEIETFFSAPHDNESSSDKKEPASSSIPTASGSNLGSVSDAIWEDLLNEDLVHGNPEEEIIFGLCPQGDEVV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5505g00021 354 MobiDBLite consensus disorder prediction 14 31 - -
Pral5505g00021 354 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5505g00021 354 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 274 IPR027725 -
Pral5505g00021 354 MobiDBLite consensus disorder prediction 291 318 - -
Pral5505g00021 354 FunFam Heat shock transcription factor 1 38 135 - -
Pral5505g00021 354 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5505g00021 354 MobiDBLite consensus disorder prediction 13 41 - -
Pral5505g00021 354 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Pral5505g00021 354 Coils Coil 161 202 - -
Pral5505g00021 354 Gene3D - 38 135 IPR036388 -
Pral5505g00021 354 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5505g00021 354 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5505g00021 354 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5505g00021 354 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5505g00021 354 MobiDBLite consensus disorder prediction 302 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5505g00021 Pral-Chr5505 81857 84165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5505g00021 31 311 HSF AT2G26150 60.424 8.23e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral5505g00021 HSF_DNA-bind 3.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5505g00021 K09419 - qsu:112015615 480.715