Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5502g00001 ATGGAGGATCACCAGATTCTCTACCCTTCTAAACCAGCAAACCCCTTAAAGCTTTTCGGCTTCAGCGTCCACCACCAGCCACACGGACTTCGAGTTGAAGACGACGACGAGGTGCTTGCAGATGATGTCTCAGGCCCAATCTCCAAGCAAACTTCCCCGTCTGGATCGCCGGATTCCGCAGCATCCGCCGGTGGTGGAGCTTTCCCTGCTTCCTCCGGCGACAGGAAATACGAGTGTCAGTATTGTTGTCGCGAGTTTGCCAACTCGCAGGCCCTCGGTGGCCACCAGAACGCTCACAAGAAAGAGCGCCAGCAGCTGAAGCGAGCCCAGTTGCAAGCTTCACGAAACGCCGCCGTTTCGTTCGTGAGGAACCCGATAATCTCTGCCTTCGCCCCTCCGCCTCATTTGCTTTCTCCGGCGGGCCACGTCATGGTTCCGGCAGGTACTCCGTCGTCCTGGGTCTATGTTCAGCCACGTGCAGCTCCTCAGCCGTTCCACGTGTCGGTATCACACGGCTGCGTGTTCCCTTCGTCAACGAATAGTACTTTCTGTGGTAGTAATACTAGTCAGAGTAGGAGATCGGCGGCCGCCGGGATGTTATCCTGTGGTGGCAGCGCAGGGGAGTCCATGGGATCTCAAGTACATGGTAGGGCCCATGGGCCATCTTTAAGTAGATTTTCGAAAGGGGATGGTGGGCCCAACTTCGATGACCCATTGGGCTTGGACTTACATCTAAGCCTTGCGCCAGCTGCGCCGTGA 759 0.5679 MEDHQILYPSKPANPLKLFGFSVHHQPHGLRVEDDDEVLADDVSGPISKQTSPSGSPDSAASAGGGAFPASSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVSFVRNPIISAFAPPPHLLSPAGHVMVPAGTPSSWVYVQPRAAPQPFHVSVSHGCVFPSSTNSTFCGSNTSQSRRSAAAGMLSCGGSAGESMGSQVHGRAHGPSLSRFSKGDGGPNFDDPLGLDLHLSLAPAAP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5502g00001 252 MobiDBLite consensus disorder prediction 199 237 - -
Pral5502g00001 252 Gene3D Classic Zinc Finger 68 124 - -
Pral5502g00001 252 SUPERFAMILY beta-beta-alpha zinc fingers 73 104 IPR036236 -
Pral5502g00001 252 MobiDBLite consensus disorder prediction 45 59 - -
Pral5502g00001 252 PANTHER ZINC FINGER PROTEIN 5 12 251 IPR044299 GO:0010090
Pral5502g00001 252 MobiDBLite consensus disorder prediction 33 69 - -
Pral5502g00001 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Pral5502g00001 252 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Pral5502g00001 252 FunFam Zinc finger protein 6 69 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5502g00001 Pral-Chr5502 6907 7937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5502g00001 16 250 C2H2 Transcription Factor Family AT1G68360 46.792 5.06e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5502g00001 - - gmx:100811796 295.049