Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral549g00015 ATGGGGCTAGAATCCTTCCTCATCTGGCTGGTTCGTTTCCTGGTCGTATCTCCGGAGGCAGCAGGTAGCAGGGAAGCAGAGCGAAGGGGCGTCTTCCTTCTCAAGCTTGGAAATGGTCGTATGCACAGTCGTGGTAAGGGTATCTCTGCTTCAGCTCTTCCTTACAAGAGAACCCCGCCGAGCTGGTTGAAGATCTCAGGTCAAGATGTTGAAGAGAACATCTGCAAGTTTGCCAAGAAGGGTTTAACGCCTTCCCAAATCGGTGTTATTCTTCGTGACTCTCACGGTATTGCTCAGGTGAAGGGTGTCACTGGCAACAAGATTTTGCGTATTCTGAAGGCCCATGGTCTTGCTCCTGAAATACCGGAGGATCTCTACCACCTCATCAAGAAGGCTGTCTCAATTCGTAAGCATTTGGAGAGGAATAGGAAGGACAAAGACTCCAAGTTTAGGTTAATTTTGGTAGAGAGCAGGATTCATCGCCTTGCTCGATACTATAAGAAAACAAAGAAGCTTCCGCCTGTATGGAAATACGAGTCCACAACTGCCAGCACGCTTGTTGCTTAG 567 0.485 MGLESFLIWLVRFLVVSPEAAGSREAERRGVFLLKLGNGRMHSRGKGISASALPYKRTPPSWLKISGQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKGVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral549g00015 188 SMART Ribosomal_S13_N_2 39 97 IPR012606 GO:0003735|GO:0005840|GO:0006412
Pral549g00015 188 Hamap 30S ribosomal protein S15 [rpsO]. 40 186 IPR023029 -
Pral549g00015 188 FunFam 40S ribosomal protein S13 72 119 - -
Pral549g00015 188 Gene3D - 72 119 - -
Pral549g00015 188 Pfam Ribosomal S13/S15 N-terminal domain 39 97 IPR012606 GO:0003735|GO:0005840|GO:0006412
Pral549g00015 188 CDD Ribosomal_S15p_S13e 107 180 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pral549g00015 188 Gene3D - 120 188 - -
Pral549g00015 188 FunFam 40S ribosomal protein S13 120 188 - -
Pral549g00015 188 PANTHER RIBOSOMAL PROTEIN S15P/S13E 39 188 IPR023029 -
Pral549g00015 188 Pfam Ribosomal protein S15 111 181 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pral549g00015 188 SMART Ribosomal_S15_2 107 186 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pral549g00015 188 ProSitePatterns Ribosomal protein S15 signature. 135 165 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pral549g00015 188 SUPERFAMILY S15/NS1 RNA-binding domain 103 179 IPR009068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral549g00015 Pral-Chr549 139227 142232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral549g00015 39 188 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 92.667 9.08e-101 285