Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5495g00004 ATGGCCAAAAGATCATTCAAAAGCGAAGAAGAAGAAGATCGCGATACGAAGAAGAAGAAGAAGATAGTGATAAGGGTGGTTTTTGGGGCAAGGACGAAGACAGAGATGGGGGGTGAGAGTGAGGGGTCAATGCTGCGTTGTCAAGCAGACGAATGTGGAGTGGACTTGACAATGGCGAAGAAGTATCACCAGAGGCACAGGGTTTGTGACAGACATTCCAAAGCTTCTGTGGTTCTAGTTTTTGGCATTCGTCAGAGATTCTGCCAACAGTGCAGCAAGTTTCATGAAGTGGCACAGTTCGATGGCAGCAAAAGGAGTTGCAGGGAAAGACTGGCAGGTCATAACCAACGTCGAAGAAAAACCTACTCACACGTTCCCTCTGCCTCAACCACTCCCGCTTATTCAAATCATCAGATTCTCCATTCTTGTGGGTTAACATTAACATCCCAACAAGAGTCTTCGATATAA 468 0.4615 MAKRSFKSEEEEDRDTKKKKKIVIRVVFGARTKTEMGGESEGSMLRCQADECGVDLTMAKKYHQRHRVCDRHSKASVVLVFGIRQRFCQQCSKFHEVAQFDGSKRSCRERLAGHNQRRRKTYSHVPSASTTPAYSNHQILHSCGLTLTSQQESSI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5495g00004 155 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 122 IPR044817 GO:0003677
Pral5495g00004 155 Pfam SBP domain 47 120 IPR004333 GO:0003677
Pral5495g00004 155 Gene3D - 38 108 IPR036893 GO:0003677|GO:0005634
Pral5495g00004 155 ProSiteProfiles Zinc finger SBP-type profile. 44 121 IPR004333 GO:0003677
Pral5495g00004 155 SUPERFAMILY SBT domain 45 123 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5495g00004 Pral-Chr5495 19787 20383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5495g00004 47 120 SBP-box Gene Family AT3G15270 67.568 3.64e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral5495g00004 SBP 2.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5495g00004 - - qsu:112040672 148.673