Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5492g00031 ATGAGGAGGGTTAGAGGAGCCGCCGCTGTTAAACAGATGGCGGCGGTTGAACTTGATGGATCCGGTTCAAGGGCGGTTTTAAAAGAGCCAAGGTACCGGGGCGTGAGGAAGAGACCGTGGGGCAGATTCGCCGCCGAGATCAGAGACCCCTTGAAGAAAGCTCGTGTCTGGTTAGGAACTTTTGACTCCGCCGAGGAAGCGGCTCGAGCTTACGACGCCGCGGCGATAGCCCTCCGTGGACCCAAGGCCAAGACCAATTTTCCTATCTCTCCTTCTTTCTCGCCGTTCTGTTACCCCACCACCAACCCCAACGTCAACGAGGACGTCTTGGATCACCGGTTGTTTGGGAACAGCGCTTTCCAGGAGCACCAGATTAACCCTCAGAGACCAGCCACCAGTAGCATGAGCAGCACATCCTTCAGCGGGCCACGGCCACCGTCCACGACGGCTCCGCCAGCAGTCAACCGTAGATACCCCCGGACGCCGCCGGTTATGCCAGAGGACTGCCATAGCGACTGCGATTCCTCGTCGTCAGTGATCGACGGCGACGGCGGCGGTGAGGTAGCCGATTTCGCCTCGTCGTCGTTCCGCCAACCGTTGCCTTTCGATCTCAACTTCCCACCGTGGGATGCGGCTAACGTTGCGGGTGACGATCTTCACTGTACCGCACTCTGCCTCTGA 681 0.5932 MRRVRGAAAVKQMAAVELDGSGSRAVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAAIALRGPKAKTNFPISPSFSPFCYPTTNPNVNEDVLDHRLFGNSAFQEHQINPQRPATSSMSSTSFSGPRPPSTTAPPAVNRRYPRTPPVMPEDCHSDCDSSSSVIDGDGGGEVADFASSSFRQPLPFDLNFPPWDAANVAGDDLHCTALCL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5492g00031 226 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Pral5492g00031 226 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Pral5492g00031 226 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Pral5492g00031 226 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Pral5492g00031 226 FunFam Ethylene-responsive transcription factor 2 31 89 - -
Pral5492g00031 226 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Pral5492g00031 226 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Pral5492g00031 226 MobiDBLite consensus disorder prediction 145 159 - -
Pral5492g00031 226 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Pral5492g00031 226 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Pral5492g00031 226 MobiDBLite consensus disorder prediction 126 186 - -
Pral5492g00031 226 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 181 - -
Pral5492g00031 226 MobiDBLite consensus disorder prediction 126 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5492g00031 Pral-Chr5492 222160 223323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5492g00031 1 226 AP2-EREBP Transcription Factor Family AT1G50640 55.745 7.47e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5492g00031 AP2 7.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5492g00031 K09286 - qsa:O6P43_013653 256.529