Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5492g00030 ATGGCTAGCGAAGAGGAGAGACATCTGGAAACTCAACTAGAGCTCCAATTGCAGGAACAGAGGGATTCACTCTCTGCACTCAATGAAGCTTTGGTTTCTGATCCATCCAATCCCGAGCTTCTTGCGGTTCACGAGGAGCTTGTTCAGGCAATCAAGGATGCAGAGGAAGGGCTTCTTCACTTAAAGCGTACTCGATTATTGCATGAAGCGGATTCAGTCCTGAATAGATCTAATCTTTCTGCTCAAGCAGAGAAAGTTGAGCCACTTGATCCTGCAGATGTTGAACCAGAACCTTTAGAGGAACAACATTATTCTGTTGGATCTAAGTGTAGATTTCGTCACACTAATGGTCGTTGGTACATTGGTCAAGTGGTGCAGTTAAATAGTTCTTCAGCAAAAATTTCATTCCTGATGCCTACGTCTGAGAATATGCTGATGTGCAAGTTTTTTCTGCAACAACGATGTCGCTTTGGTGCTAACTGTCGTCTATCACATGGTATTGATGTTCCACTGTCTTCCCTCAGAAAATATGTTCCTACCATCTGGAAGCAGTCCCTGGTTGGTTCAAGTATATGGGCAGTCTCAGACGTTAATGCTGGCATTTGGAAGGAAGCTGAGCTTGAATCCTGGGATGAAGAACTTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTGTGAAGTTAGGAGCAGAAGCTATAGCATTATCTGAATGTGCAGAAGTTAGTGATGAAGAGAGTGATTCCAGCTCAGAACAGTCTGATTTTAGTGACTATGAAGAAGGTGGCCCCCAAGGTTTAGGCTTTCTGGAAAGCACCAACTTGCAGCGGGGTATTCAGAATGAAACTGCTATATTTGCTAAATGGGAGAATCACACCAGGGGCGTAGCTTCCAAAATGATGGCCAATATGGGTTATCGTGAAGGTATGGGTTTAGGTGTTTCTGGTCAAGGAATGATTAATCCCATCCCAGTGAAGGTCCTTCCACCAAAGCAATCGTTAGATCATGCTCTTGAATCTCATAAAGATAAAGGAGAAGAGAGCAAAGACAATCAAGGTAAGAAACGGAGTAGAGGTGGTAAGAGAAAACGTGATAAGAAATTTGCAGAGGCAATTCGGGTAGCAAAAGAAGAGGAGGAAGCGGTATCAGATGTCTTTACACTAATAAATAATCAGCTGGCAATGCATGGTGAAGCTATAAATGGTGGATCAGCGAGGAAGCAGCAAGGTAAAGGTTCAGGGGAAGGTAAAAAGGTTGATAGGAGGGCTTTGATTGCTTATGAGGATGAGGTAAATGACTTAAGGATTCGGGTTGCGAAACTTGAAGAAATGGTGAATAGAAACAGGAGAGAGAAGGCAGTTTATGAGGCTGCTATGAGAAAGTTGATTGAAACCCGCAAGGCTTTAGCTGAGACTGAAGCAGCCCATGTCTCCGCCTCAAATGCAGTGGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTGGAGAGAAAAAATTATTTTGGGTGGGGAGGGGGTGAGGGAAAGGAATTTTGCTATTGGACCTTAA 1554 0.4344 MASEEERHLETQLELQLQEQRDSLSALNEALVSDPSNPELLAVHEELVQAIKDAEEGLLHLKRTRLLHEADSVLNRSNLSAQAEKVEPLDPADVEPEPLEEQHYSVGSKCRFRHTNGRWYIGQVVQLNSSSAKISFLMPTSENMLMCKFFLQQRCRFGANCRLSHGIDVPLSSLRKYVPTIWKQSLVGSSIWAVSDVNAGIWKEAELESWDEELGVGQVVFRDDGSSVKLGAEAIALSECAEVSDEESDSSSEQSDFSDYEEGGPQGLGFLESTNLQRGIQNETAIFAKWENHTRGVASKMMANMGYREGMGLGVSGQGMINPIPVKVLPPKQSLDHALESHKDKGEESKDNQGKKRSRGGKRKRDKKFAEAIRVAKEEEEAVSDVFTLINNQLAMHGEAINGGSARKQQGKGSGEGKKVDRRALIAYEDEVNDLRIRVAKLEEMVNRNRREKAVYEAAMRKLIETRKALAETEAAHVSASNAVVSKEKEKRWLKFWREKIILGGEGVRERNFAIGP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5492g00030 517 Coils Coil 425 476 - -
Pral5492g00030 517 SMART G-patch_5 292 338 IPR000467 GO:0003676
Pral5492g00030 517 MobiDBLite consensus disorder prediction 338 368 - -
Pral5492g00030 517 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Pral5492g00030 517 Gene3D - 121 178 - -
Pral5492g00030 517 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Pral5492g00030 517 MobiDBLite consensus disorder prediction 338 355 - -
Pral5492g00030 517 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Pral5492g00030 517 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Pral5492g00030 517 MobiDBLite consensus disorder prediction 243 264 - -
Pral5492g00030 517 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Pral5492g00030 517 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Pral5492g00030 517 Coils Coil 1 30 - -
Pral5492g00030 517 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5492g00030 Pral-Chr5492 214016 219349 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5492g00030 G-patch 2.4e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5492g00030 - - gmx:100794921 714.146