Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5492g00014 ATGGAATTGGCGATGGTTGCTGAGGGAACGGAGCCGCCGGAGGAGACGCAATCCGAGGGCTTGCCGGTGAAAAGGGCGATTGAGAATGGTGGGAGTGAGGAATTGGCCAAGAAGCCTAAGGTTGAAGCAGCGGCGGCTGCGGCTGCTGCGTCTAGCGGGGAGTTGAAGAGAGTGGCGGAGATTGTGCTGGTTTTGTCGACGATGTCGGCAATGCGAGGCGGGAAGAAGCCCACTAATGTGGAGATTGAGTTGATGAAGGAGGCGAGGATGAAGTTGGTGGAGTTGTGTCAAGGGATGGCCCCCAAGGATATTGTGGCAAGGGAAGCTGTGGGGACTGTGATTGAGGATCTTGGATTGAACGGGAAGATTAAAGACCAGGGATTAGGGTTTCAAACTCCAAAGATGTCTATAACCGAAAGGTTCTCACTCTCCAAGTTGAAGATGGAAGAATCAAAGAAGTTTCATGAACATTCTGCTCCATCTACTTCTCAGCCATTGCAAACAAGCATGGGTAGTGGAATGGTTGAAAACCGTATGCCATCTCATACTGTTCGAATGTTTGCTTCGGACAAATCAAGCCACACAGGAGTCTCGTCTTCTGGTACCATAACTTCTCCTCACGTGACTCATGTTCCTGCTGGATCTTCTTCTGGTTTGCAATATCAGTCAACTACTACTGAAGTAAAATCACCTATAGTTTCTGGCGGAATGCCTAGCAGTCACTTGGGCAGAAATTCATCTTCATTAGCATTGCCTAAAGTTGAACAACCACAGTTCAAAGTTGATGGAGGATCAAGTGGGCCTTATTTGATGCATGCTCAAGCAAATTCTTCGAACCAACCGTTGGTGAATGCTCCAACATGGTCAATACAAACTCAAACTCAATCTGGCTCATTAGCTAGGAGTACACCAGAAAACAAAGTGACTGGACATAACCCTGTCAAGGTTGAGGGAATGGGTGACCTAACTGGGCCCAGGGCTGCTTCACAAATAGCTAGGGATCAGGGCTATAGACCCATAGTAACTCAAACATCCCCTGGAAATTTGTCTAGCTTGCACCAGCCATTGCAGGGCATGAACATTGTTCAGCCTTCTTCACTTCATAATAATCACACTGAAATTGCAAGGATTGTCCAGAGACTGTTACAACCAAAGCTTCCTGAGCATCCCACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCATTTACTTGCCAAATGTGTGATCTCACTGTCAATGAAGTGGATACTGTGCTTCTTTGTGACGCTTGTGAAAAAGGGTTTCATTTGAAGTGTTTGCAGCCATCACTTTTGAGAGGAATTCCTAGAGGTGAGTGGCATTGCATGAGGTGCTTGACATTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTGATGAGGTCCGCAAACACCCCACCAAAAGTGCCCTCTAATGCAGTTGGAGTCCAACCATCCTTAGAGAAGAAAACTGGAGTTGTAGCTCCAAAGGTCAGCTCACAGGAGTTAACAACAAATGGAGGCTCTGTGTCAACTGATGCCACTGGTAAGAACAAAAATGTTGAGCTTCCATCTGTCTCAAAGGTCCCTGATGCAAAAGAAATTCAGGATAACACTCATTCATCAAGCAGCAAACACATGGATGAGAAGCCTGACCCAAATATCTCAATAAAATCCCTTAGTGCAGCTTCTAGTCCTGCTGTTGGCATGCCAGGTGAAAGTTCTGCTGAACAAATAATTTCTGAGCCATCCACCTCTAAAGAGAGAACCTTTGCCTCAGAATCAGAAGTGCTTCCTCAGTTAACTGAGTCAGTTAAACCTGACAATTTGCAAATGTCAAAAGCTGTACAAGTTGAACTGACATCACTACCAAACAATGTTGACGTTTTGTCATATAAACATGTTGAAAATAATTTGACAGGTAATAACAGAAAGGAATCTCATGGGGGAGAAAGTTTGACATATGATATCAAACGTGATGACCAATATGTTGCACTAGCAAATTCTGATAAAAGTTCTGGAACACATGGTGAAGGGAGACAATGCACTGCATTATATTCCGATGGCTTACATGCAGTAGAATGGGTTGGTGATCTTGTGCAACTTGTTGATGAGAAAAGGTTTTACCAATCATGCCAAGTTAATGGAGTTACATATAGGCTGCAGGATCATGCTCTTTTTAAATCAAGTCATGGCAAGCTAATTCCATCTAAACTGCAGTCTATGTTTGAAGATAGCAAAACTGGATTGAAGTGGGTAAATGTGACAAAGTGCTACTTTCCTGGTGATTTACCAGGGAATATCCCTCATCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGATCCATTCAAGGTCCCTGTGAAGTCCTCCCGTCTTTTAAATTTCAACAAGAAAACAATAGACGAAGGGGGTTAGAACCTGAGGAAAGTGCTAGACTTCGGCCCATTTTCCTATGCAGATGGTTCTATGATGGAGTCAAAAAATTATTTCAGCCTGTTACCAGTTGA 2544 0.4395 MELAMVAEGTEPPEETQSEGLPVKRAIENGGSEELAKKPKVEAAAAAAAASSGELKRVAEIVLVLSTMSAMRGGKKPTNVEIELMKEARMKLVELCQGMAPKDIVAREAVGTVIEDLGLNGKIKDQGLGFQTPKMSITERFSLSKLKMEESKKFHEHSAPSTSQPLQTSMGSGMVENRMPSHTVRMFASDKSSHTGVSSSGTITSPHVTHVPAGSSSGLQYQSTTTEVKSPIVSGGMPSSHLGRNSSSLALPKVEQPQFKVDGGSSGPYLMHAQANSSNQPLVNAPTWSIQTQTQSGSLARSTPENKVTGHNPVKVEGMGDLTGPRAASQIARDQGYRPIVTQTSPGNLSSLHQPLQGMNIVQPSSLHNNHTEIARIVQRLLQPKLPEHPTWTPPSRDYMNKAFTCQMCDLTVNEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSANTPPKVPSNAVGVQPSLEKKTGVVAPKVSSQELTTNGGSVSTDATGKNKNVELPSVSKVPDAKEIQDNTHSSSSKHMDEKPDPNISIKSLSAASSPAVGMPGESSAEQIISEPSTSKERTFASESEVLPQLTESVKPDNLQMSKAVQVELTSLPNNVDVLSYKHVENNLTGNNRKESHGGESLTYDIKRDDQYVALANSDKSSGTHGEGRQCTALYSDGLHAVEWVGDLVQLVDEKRFYQSCQVNGVTYRLQDHALFKSSHGKLIPSKLQSMFEDSKTGLKWVNVTKCYFPGDLPGNIPHPCISEVNEVYESNSDRTEMAGSIQGPCEVLPSFKFQQENNRRRGLEPEESARLRPIFLCRWFYDGVKKLFQPVTS 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5492g00014 847 Pfam PHD-finger 406 453 IPR019787 -
Pral5492g00014 847 ProSitePatterns Zinc finger PHD-type signature. 406 452 IPR019786 -
Pral5492g00014 847 ProSiteProfiles BAH domain profile. 719 846 IPR001025 GO:0003682
Pral5492g00014 847 MobiDBLite consensus disorder prediction 472 558 - -
Pral5492g00014 847 MobiDBLite consensus disorder prediction 295 322 - -
Pral5492g00014 847 CDD BAH 718 846 - -
Pral5492g00014 847 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 846 - -
Pral5492g00014 847 MobiDBLite consensus disorder prediction 1 39 - -
Pral5492g00014 847 MobiDBLite consensus disorder prediction 151 171 - -
Pral5492g00014 847 Gene3D - 698 847 IPR043151 -
Pral5492g00014 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 459 IPR013083 -
Pral5492g00014 847 ProSiteProfiles Zinc finger PHD-type profile. 403 455 IPR019787 -
Pral5492g00014 847 SUPERFAMILY FYVE/PHD zinc finger 396 460 IPR011011 -
Pral5492g00014 847 MobiDBLite consensus disorder prediction 535 555 - -
Pral5492g00014 847 MobiDBLite consensus disorder prediction 499 524 - -
Pral5492g00014 847 SMART PHD_3 405 453 IPR001965 -
Pral5492g00014 847 MobiDBLite consensus disorder prediction 295 309 - -
Pral5492g00014 847 MobiDBLite consensus disorder prediction 191 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5492g00014 Pral-Chr5492 63963 68964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5492g00014 405 453 C2H2 Transcription Factor Family AT3G01460 42.857 1.62e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5492g00014 PHD 1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5492g00014 - - gmx:100807139 1047.73