Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5492g00013 ATGGCATCGTCTTCAGACTCATGGATGAAGGAGTATAATGAAGCCGTGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAACGGAATTCGTTTGCTACATCTGGACCTGAAACCCAGCGCCATGCATCTGCTATAAGAAGGAAGATAACAATATTAGGGACTAGACTTGATAGCTTGCAATCCCTTTTGTCAAAGCTTCCTGGGAAACAGCCTATATCTGACAAGGAGCTGAATCGGCGTAAGGACATGATTGCAAATTTGAGGTCAAAAGTTAACCAAATGGCATCAACATTGAATATGTCTGGCTTTGCAAACAGGGATAGTTTGCTTGGACCAGATACAAAACCGGCTGATGCCATGACCAGAACAGTTGGCTTGGATAACGGTGGACTTGTTGGACTTCAACGGCAAATTATGAGCGAGCAAGATGAGGGCCTTGAGAAATTGGAGCAGACTGTAACAAGTACAAAACATATTGCACTGGCTGTAAATGAAGAACTGGATTTACACACAAGACTCATTGATGACTTGGACCAGAATGTAGATGTTACAGATTCTCGGCTGCGGAGGGTGCAGAAGAACTTGGCAGTTTTGAATAAGCGTACGAAGGGTGGTTGCTCCTGCTTGTGTTTGCTTTTAGCAGTTGTTGGTATAGTGGTTTTGGTTGGTGTTATATTTCTGTTGATCAAATTTTTGTAA 702 0.4259 MASSSDSWMKEYNEAVKLADDISGMISERNSFATSGPETQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISDKELNRRKDMIANLRSKVNQMASTLNMSGFANRDSLLGPDTKPADAMTRTVGLDNGGLVGLQRQIMSEQDEGLEKLEQTVTSTKHIALAVNEELDLHTRLIDDLDQNVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCLLLAVVGIVVLVGVIFLLIKFL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5492g00013 233 FunFam syntaxin-51 isoform X2 139 201 - -
Pral5492g00013 233 SUPERFAMILY t-snare proteins 27 100 IPR010989 GO:0016020|GO:0016192
Pral5492g00013 233 SMART tSNARE_6 132 199 IPR000727 -
Pral5492g00013 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Pral5492g00013 233 Gene3D - 139 201 - -
Pral5492g00013 233 CDD SNARE_Qc 140 197 - -
Pral5492g00013 233 PANTHER SYNTAXIN 34 217 IPR045242 -
Pral5492g00013 233 Pfam SNARE domain 174 223 IPR000727 -
Pral5492g00013 233 SUPERFAMILY SNARE fusion complex 128 198 - -
Pral5492g00013 233 Coils Coil 175 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5492g00013 Pral-Chr5492 45393 46798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5492g00013 1 233 SNARE and Associated Proteins AT1G16240 70.815 7.77e-123 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5492g00013 K08503 - rcu:8268133 360.533