Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5486g00023 ATGGAAATGGAAGATCACCACAACAATCATCATCATCCCCAGCAATATGGCATGGCGGATCTCAGGCAGCTCATGAATGGAGGTCCCAGGTCGACTGCTACACATTTCTCCTCCCTGCCTCCGCAGCCCACGGCGGAGCTCTTCCAGGCTCACCGGAACCTCACGCCCACCCACCATCAGCACTACGACATGATGATGTTCGGTCGCCATGTCGCCGATGTAATGCCTCGTGCCCTCCACGACTTTGCCTCCGATTCACCTCCTGCCGCTGCTCCACCCACAAACAATATTACTGTAGCCACTCCGGCTACCACCGCCAGCGCTTTCACCCCTCCACTCAGTGGCTTAGAGGCTGAGACCCCTGGCTGCCTCGCCGGGGATGCCTCCACGGGAAGATGGCCCAGGCAGGAAACACTCACTCTTCTTGAGATCAGATCTCGTCTCGACCCTAAATTCAAAGAAGCCAATCAGAAAGGCCCCTTATGGGACGAAGTCTCTAGGATCATGTCGGAAGAATATGGCTACCAAAGGAGTGGGAAGAAATGCAGGGAAAAATTCGAGAACTTGTACAAATATTACAAGAAGACAAAGGAAGGTAAGGCAAGGAGACAGGATGGGAAGCATTACAGGTTCTTCCGTCAACTTGAAGCTTTGTATGGAGGAAACAGCAACTCGACCTCAGTGCAAGAAACCAATTATGGCAGCAGCGGAATTCGCTTTCAGACACCCTCCCAAACAAATCAAGACATGTTTCAGTCTCACAACCACAAGACTTGTGATAGCCTCAGCCTCACAAACTCAACAGATTTCGGCACGTCATCATCGGAGGACAACAATCTTTGCAGTATGGAAAATGATTCGACGGAGAAGGGGAGGAAGAGGAGTAGTGGAAGCAGATGGAAGGCAAAAATAAAAGAGTTCATTGACTCACAGATGAAGAAGCTGATTGAGAAGCAAGAGGCGTGGATGGATAGGCTAGTGAAGACGCTTGAACAGAAGGAGAAGGAGAGGATTTCAAGAGAGGAAGAATGGAGAAGACAAGAGGCAGCGAGGTTGGAAATGGAGCACAAGTTTCGTGCTAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTCTAATGGACGCCTTGCAGAAACTAACGGGAAGAGAGGTAAAAGCTCAATCTCCGGTTGAGCAGGCCCTAATTGTGGCTAATGAAATTCAGAATCCTAGGGAAAACCAGAACGAAGAGGGAAGTGAAATCCTCAACGGTAGCAATAGAGGTGTTGACAACTGGCCAAAAAGTGAGACAACAAGGCTCCTAGAGTTGAGGGCGGAGATGGAGTCTGGGTTTCAGCAAAGTGGGTGCTCGGAAGAGGTTATGTGGGAGGAAATAGCCAACAAAATGGCTTGCTTTGGCTACGAAAGGACTGCTTTGATGTGCAAACACAAGTGGGAAAGCATAAACAGCTTTACAAATACCAAGGAAGGAATCAAGAAGCGCAAGGAAAAGTCTAGAAGCTGTTTTTACTTCGACAACAACGTCAATGACCAGCCATCCTTGTATAACCAAGGAACTACTCCGTATTGTGATATCGACGTTAACGATCAACGGCACGACAATGAGAGGCTACAAACAAATAATGGCTCGTCGCCTTCAAATTCCAATGCGGTTGCGGCGGACGTTAACTGTTTTCCCTTCTTTATCAGCACTGAAGGATCAGAAAATTTGTGGGAAAACTACGGCTTGAAGATTAACAAAGGAAATCAAAACCAGTGA 1761 0.4832 MEMEDHHNNHHHPQQYGMADLRQLMNGGPRSTATHFSSLPPQPTAELFQAHRNLTPTHHQHYDMMMFGRHVADVMPRALHDFASDSPPAAAPPTNNITVATPATTASAFTPPLSGLEAETPGCLAGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEYGYQRSGKKCREKFENLYKYYKKTKEGKARRQDGKHYRFFRQLEALYGGNSNSTSVQETNYGSSGIRFQTPSQTNQDMFQSHNHKTCDSLSLTNSTDFGTSSSEDNNLCSMENDSTEKGRKRSSGSRWKAKIKEFIDSQMKKLIEKQEAWMDRLVKTLEQKEKERISREEEWRRQEAARLEMEHKFRAKERAWIEARDAALMDALQKLTGREVKAQSPVEQALIVANEIQNPRENQNEEGSEILNGSNRGVDNWPKSETTRLLELRAEMESGFQQSGCSEEVMWEEIANKMACFGYERTALMCKHKWESINSFTNTKEGIKKRKEKSRSCFYFDNNVNDQPSLYNQGTTPYCDIDVNDQRHDNERLQTNNGSSPSNSNAVAADVNCFPFFISTEGSENLWENYGLKINKGNQNQ 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5486g00023 586 Pfam Myb/SANT-like DNA-binding domain 424 506 IPR044822 -
Pral5486g00023 586 Pfam Myb/SANT-like DNA-binding domain 132 218 IPR044822 -
Pral5486g00023 586 MobiDBLite consensus disorder prediction 223 252 - -
Pral5486g00023 586 Gene3D - 133 195 - -
Pral5486g00023 586 Gene3D - 426 485 - -
Pral5486g00023 586 CDD GT1 132 197 - -
Pral5486g00023 586 FunFam Trihelix transcription factor GT-2 426 488 - -
Pral5486g00023 586 SMART sant 422 485 IPR001005 -
Pral5486g00023 586 SMART sant 129 192 IPR001005 -
Pral5486g00023 586 ProSiteProfiles Myb-like domain profile. 125 190 IPR001005 -
Pral5486g00023 586 FunFam trihelix transcription factor PTL-like 133 195 - -
Pral5486g00023 586 MobiDBLite consensus disorder prediction 404 423 - -
Pral5486g00023 586 MobiDBLite consensus disorder prediction 270 297 - -
Pral5486g00023 586 PANTHER FI21293P1 114 537 - -
Pral5486g00023 586 MobiDBLite consensus disorder prediction 270 285 - -
Pral5486g00023 586 CDD GT1 425 490 - -
Pral5486g00023 586 ProSiteProfiles Myb-like domain profile. 418 483 IPR001005 -
Pral5486g00023 586 MobiDBLite consensus disorder prediction 110 130 - -
Pral5486g00023 586 Coils Coil 316 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5486g00023 Pral-Chr5486 176327 179721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5486g00023 12 581 Trihelix Transcription Factor Family AT5G03680 46.777 8.04e-141 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral5486g00023 Myb_DNA-bind_4 9.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5486g00023 - - aprc:113870891 753.051