Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5486g00017 ATGAGGCACCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCCCAGACCCTCCAGATTATTGAGAAGGAACTCGGCTTCACTCCTGCTGTCAATGGTTCATCTACTGCATCTACACTGAGGAGTGACTCACAGTCACAACGACCACAGCATAGCATCCATGTGAATCCTAAATATTTGGAGAGGCAGCGTCTTCAGCAGTCTGGCAGGATTAAAGGAACAGCTAATGATATTGCTGGGACTATTACAAGCTCTAGTGATGGTGCAGAAAGGCCAGATAGAGCATTAGGTGCAGCACGACCATGGGTGGATTCCAGTGCTGACATGCATAACATTCAGGGCTCTAATAGAGATTCGTATAATGATTCTGTTCCTGAAAAGGGCATTGGTACATCCTATGGAGGCAATGAATATGGCTCTGATCTTTCAAGGAATTCAGGTTTGGGTATTGGAAGAGCTGGTGGCAGGACCTCTGAGTTAGCACGTGACAAAGCTTGGTACAAAGCAGGCAGCAATGCTGCAGACATGATGTCTGCCCAAAGGAATGGTTTCAGTCTCAAGCGTAGCTTATCAAATCATGAAGCACCAAAGTCCATCAACTTGGATGAACATAATCAACCAACACAAACCATGACTGGCATAAAGAGTAGTGTCTTGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGATGAGGTGAATGCTGGACTGAGTGAGCATGGTGCATCCAATGCCTCTAACAACTTGAGCAAAGAGTGTTGGACTGCTGATGAAGACAATTTGGCAGTTGGAGGTCACCTTCAAAGGACGTTGCATGAAGATAGAGATGTGTCCACCGAAATGAAACGCACCTTTGGTCATCCTTGGAAATCACAGCAGCAGCAGTCATTTGATGAGCTGAATCGTAGGCCATGTCCTTCAGAAGGCATTGGATCTGCTCTTGGAAGGTTGCCAAACATTGTGAATTCTTCTAATGTCAAAATGGGAAATCGGCCTTTCTTGTCAAATGCCACATTAGGATCAGTAGGAACAGTGCGACAACAGCAGTCTCATTCTGTAGGAGCAGAGTCTCCTTGGGAGTCACCTTTGCGACAGCAGTCTCCATCACCATCAGTCAATGTGCCCCATCCTCATGAAATGCAGATCTTGGCAGAGCAAGACCATCCACAGACTCTTAAAACGTCTCAATTTTCAGGACGTTTACGGAGCCAAGATATTCGAGATTCATCATCTGTCCTTCCACGTAATGTTCAGGCTGGTAACTCTCAGAGATCACATCAAAAAGACTTGCAAGGTCCATTGTCTTCAGTGTCTACTTTTCAGCCACGACATCATAGTGCAGCTTCACAGCCACAGGATCTTGGTTCCAATAGTGAAGTGCCTGAGATGAAGGGAAAGATGACCCACTCTAAAGAAACTTCAGAGCAGTCAACTACAAGTTCTATGTTAGCTGCAGTTATGAAGAGTGGAATTTTTACAAGTGGTCAGCATGGCATAAGTTTCTTGGATAGGAGGAACCTTCCATCAAAGTCCGGGGTTCAGCCTGCCCGGCCAAGTGGATCATCTCCTACAACATCAGTTTCTTCAGGGCCTGGGGTTGCGTCTCCATCTCGATTAGGTCCTTCTAATGATGGCCTATCTACTCTGTCAAAAGAATCTCAAGGAAAGGTTGGAGCCCCATCAAGGCTGCCTGCGCTCCCACCAGCTTCCTCTACTGTGAGTAGTGCCTCAGCCAAGACATCAAGTGCCACTAATAATAAATCTGATCCAGTTTCAAACCTTTTAAACTCATTAGTTGCAAAGGGTTTGATTTCTGCAAAAACAGATTCATCTACTGAGGTGCCAGCTGAGGTGCTGATTCGATTGGAAGATCAGAGCCAAAGCATCACCACCAGTGGCACCTTGCCAGCTGTTTCAGTTACTGGTTCTGAAACTGTTCCTGTCATATCTACCGGAGATGATCAGCCTGCAAAAGGTTCCTCCAGCCAATCAACCCCTACAGAAATAAAAAATCTAATTGGCTTTGAGTTTAAGCCCAGTGTGATCCGGGAATTGCATTTACCTGTGATCAGAGAACTATTGGATGATTTCCCTCATCATTGCAGTATTTGTGGCCTTAGGCTTAAACATCAAGAACAATTTAATAGACACTTGGAGTGGCATGCTATGAGAGAGAGAGAACAAAATGATATATTGAAGGCCTCAAGGAGATGGTATTTGAGATCAAGTGACTGGGTTGATGGCAAGGATGAAGTTTCATCTGAGTATGAGGGTATTGATTCCATAGATTTACATGGCAATAAATCAAACAGAAGTGAAGAGGATGCTATGGCTCCATCTGATGAAGATCAGTGCTTATGTATGCTGTGTGGTGAGCTATTTGAAGATGTTTATTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCGGTTTACCTACCTGTCTCCAGTAGTGATAGTGAGACGGATACTAACGTCAGTAGTGAAAGGGGCCCCATTGTTCACACTTGGTGCTTATCAGAGAGCTCCATATCTAACGTTCTTGCAAAGGAACAGGATTAG 2568 0.449 MRHLFGTWKGVFPPQTLQIIEKELGFTPAVNGSSTASTLRSDSQSQRPQHSIHVNPKYLERQRLQQSGRIKGTANDIAGTITSSSDGAERPDRALGAARPWVDSSADMHNIQGSNRDSYNDSVPEKGIGTSYGGNEYGSDLSRNSGLGIGRAGGRTSELARDKAWYKAGSNAADMMSAQRNGFSLKRSLSNHEAPKSINLDEHNQPTQTMTGIKSSVLSSSWKNSEEEEYMWDEVNAGLSEHGASNASNNLSKECWTADEDNLAVGGHLQRTLHEDRDVSTEMKRTFGHPWKSQQQQSFDELNRRPCPSEGIGSALGRLPNIVNSSNVKMGNRPFLSNATLGSVGTVRQQQSHSVGAESPWESPLRQQSPSPSVNVPHPHEMQILAEQDHPQTLKTSQFSGRLRSQDIRDSSSVLPRNVQAGNSQRSHQKDLQGPLSSVSTFQPRHHSAASQPQDLGSNSEVPEMKGKMTHSKETSEQSTTSSMLAAVMKSGIFTSGQHGISFLDRRNLPSKSGVQPARPSGSSPTTSVSSGPGVASPSRLGPSNDGLSTLSKESQGKVGAPSRLPALPPASSTVSSASAKTSSATNNKSDPVSNLLNSLVAKGLISAKTDSSTEVPAEVLIRLEDQSQSITTSGTLPAVSVTGSETVPVISTGDDQPAKGSSSQSTPTEIKNLIGFEFKPSVIRELHLPVIRELLDDFPHHCSICGLRLKHQEQFNRHLEWHAMREREQNDILKASRRWYLRSSDWVDGKDEVSSEYEGIDSIDLHGNKSNRSEEDAMAPSDEDQCLCMLCGELFEDVYCQERDEWMFKGAVYLPVSSSDSETDTNVSSERGPIVHTWCLSESSISNVLAKEQD 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5486g00017 855 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 847 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pral5486g00017 855 MobiDBLite consensus disorder prediction 504 594 - -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 397 459 - -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 514 557 - -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 569 594 - -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 31 55 - -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 346 376 - -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 346 378 - -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 397 482 - -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 31 52 - -
Pral5486g00017 855 ProSitePatterns Zinc finger C2H2 type domain signature. 703 723 IPR013087 -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 648 668 - -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 68 94 - -
Pral5486g00017 855 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5486g00017 Pral-Chr5486 148404 154082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5486g00017 675 845 C2H2 Transcription Factor Family AT4G04885 37.572 2.04e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5486g00017 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5486g00017 K14400 - gmx:100811629 770.77