Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5486g00016 ATGGAGATGGATAGCTCGCGTAGACCGTTTGATAGATCGAGAGAGCAAGGTATCAAGAAACCCCGACTGACCGACGAGCTCGAGCGTGGCTCTAATTCCAGTGTTCGATCGTTGCCTCAGCGACAAGTAGCTTCTGGAGTTAATTCATTGGCCCCAGCAAGGTTTAGAACAAATGACAGAGATTCCGAAAGCATCGACTCTGGTCGCGGTGGATACCAGCCCCAACCGCTCCACCACGAGCTTGTGAATCAGTACAAAACCGCACTTGCTGAGCTAACATTCAATTCTAAACCGATAATTACCAACTTGACTATAATTGCAGGCGAGAATCTTTATGCCGCGAAGGCAATTGCTGCCACTGTTTGTGCTAACATTCTAGAGGTTCCCACTGAACAAAAGCTGCCATCTCTTTATCTTTTGGACAGTATTGTAAAGAATATTGGGCGGGACTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAGGCATACAAACAGGTTGATTCCACAATCCATTCAAGTATGAGGCACCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCCCAGACCCTCCAGATTATTGAGAAGGAACTCGGCTTCACTCCTGCTGTCAATGGTTCATCTACTGCATCTACACTGAGGAGTGACTCACAGTCACAACGACCACAGCATAGCATCCATGTGAATCCTAAATATTTGGAGAGGCAGCGTCTTCAGCAGTCTGGCAGGATTAAAGGAACAGCTAATGATATTGCTGGGACTATTACAAGCTCTAGTGATGGTGCAGAAAGGCCAGATAGAGCATTAGGTGCAGCACGACCATGGGTGGATTCCAGTGCTGACATGCATGGCATTGGTACATCCTATGGAGGCAATGAATATGGCTCTGATCTTTCAAGGAATTCAGGTTTGGGTATTGGAAGAGCTGGTGGCAGGACCTCTGAGTTAGCACGTGACAAAGCTTGGTACAAAGCAGGCAGCAATGCTGCAGACATGATGTCTGCCCAAAGGAATGGTTTCAGTCTCAAGCGTAGCTTATCAAATCATGAAGCACCAAAGTCCATCAACTTGGATGAACATAATCAACCAACACAAACCATGACTGGCATAAAGAGTAGTGTCTTGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGATGAGGTGAATGCTGGACTGAGTGAGCATGGTGCATCCAATGCCTCTAACAACTTGAGCAAAGAGTGTTGGACTGCTGATGAAGACAATTTGGCAGTTGGAGGTCACCTTCAAAGGACGTTGCATGAAGATAGAGATGTGTCCACCGAAATGAAACGCACCTTTGGTCATCCTTGGAAATCACAGCAGCAGCAGTCATTTGATGAGCTGAATCGTAGGCCATGTCCTTCAGAAGGCATTGGATCTGCTCTTGGAAGGTTGCCAAACATTGTGAATTCTTCTAATGTCAAAATGGGAAATCGGCCTTTCTTGTCAAATGCCACATTAGGATCAGTAGGAACAGTGCGACAACAGCAGTCTCATTCTGTAGGAGCAGAGTCTCCTTGGGAGTCACCTTTGCGACAGCAGTCTCCATCACCATCAGTCAATGTGCCCCATCCTCATGAAATGCAGATCTTGGCAGAGCAAGACCATCCACAGACTCTTAAAACGTCTCAATTTTCAGGACGTTTACGGAGCCAAGATATTCGAGATTCATCATCTGTCCTTCCACGTAATGTTCAGGCTGGTAACTCTCAGAGATCACATCAAAAAGACTTGCAAGGTCCATTGTCTTCAGTGTCTACTTTTCAGCCACGACATCATAGTGCAGCTTCACAGCCACAGGATCTTGGTTCCAATAGTGAAGTGCCTGAGATGAAGGGAAAGATGACCCACTCTAAAGAAACTTCAGAGCAGTCAACTACAAGTTCTATGTTAGCTGCAGTTATGAAGAGTGGAATTTTTACAAGTGGTCAGCATGGCATAAGTTTCTTGGATAGGAGGAACCTTCCATCAAAGTCCGGGGTTCAGCCTGCCCGGCCAAGTGGATCATCTCCTACAACATCAGTTTCTTCAGGGCCTGGGGTTGCGTCTCCATCTCGATTAGGTCCTTCTAATGATGGCCTATCTACTCTGTCAAAAGAATCTCAAGGAAAGGTTGGAGCCCCATCAAGGCTGCCTGCGCTCCCACCAGCTTCCTCTACTGTGAGTAGTGCCTCAGCCAAGACATCAAGTGCCACTAATAATAAATCTGATCCAGTTTCAAACCTTTTAAACTCATTAGTTGCAAAGGGTTTGATTTCTGCAAAAACAGATTCATCTACTGAGGTGCCAGCTGAGGTGCTGATTCGATTGGAAGATCAGAGCCAAAGCATCACCACCAGTGGCACCTTGCCAGCTGTTTCAGTTACTGGTTCTGAAACTGTTCCTGTCATATCTACCGGAGATGATCAGCCTGCAAAAGGTTCCTCCAGCCAATCAACCCCTACAGAAATAAAAAATCTAATTGGCTTTGAGTTTAAGCCCAGTGTGATCCGGGAATTGCATTTACCTGTGATCAGAGAACTATTGGATGATTTCCCTCATCATTGCAGTATTTGTGGCCTTAGGCTTAAACATCAAGAACAATTTAATAGACACTTGGAGTGGCATGCTATGAGAGAGAGAGAACAAAATGATATATTGAAGGCCTCAAGGAGATGGTATTTGAGATCAAGTGACTGGGTTGATGGCAAGGATGAAGTTTCATCTGAGTATGAGGGTATTGATTCCATAGATTTACATGGCAATAAATCAAACAGAAGTGAAGAGGATGCTATGGCTCCATCTGATGAAGATCAGTGCTTATGTATGCTGTGTGGTGAGCTATTTGAAGATGTTTATTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCGGTTTACCTACCTGTCTCCAGTAGTGATAGTGAGACGGATACTAACGTCAGTAGTGAAAGGGGCCCCATTGTTCACACTTGGTGCTTATCAGAGAGCTCCATATCTAACGTTCTTGCAAAGGAACAGGATTAG 3048 0.4528 MEMDSSRRPFDRSREQGIKKPRLTDELERGSNSSVRSLPQRQVASGVNSLAPARFRTNDRDSESIDSGRGGYQPQPLHHELVNQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIAATVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYKQVDSTIHSSMRHLFGTWKGVFPPQTLQIIEKELGFTPAVNGSSTASTLRSDSQSQRPQHSIHVNPKYLERQRLQQSGRIKGTANDIAGTITSSSDGAERPDRALGAARPWVDSSADMHGIGTSYGGNEYGSDLSRNSGLGIGRAGGRTSELARDKAWYKAGSNAADMMSAQRNGFSLKRSLSNHEAPKSINLDEHNQPTQTMTGIKSSVLSSSWKNSEEEEYMWDEVNAGLSEHGASNASNNLSKECWTADEDNLAVGGHLQRTLHEDRDVSTEMKRTFGHPWKSQQQQSFDELNRRPCPSEGIGSALGRLPNIVNSSNVKMGNRPFLSNATLGSVGTVRQQQSHSVGAESPWESPLRQQSPSPSVNVPHPHEMQILAEQDHPQTLKTSQFSGRLRSQDIRDSSSVLPRNVQAGNSQRSHQKDLQGPLSSVSTFQPRHHSAASQPQDLGSNSEVPEMKGKMTHSKETSEQSTTSSMLAAVMKSGIFTSGQHGISFLDRRNLPSKSGVQPARPSGSSPTTSVSSGPGVASPSRLGPSNDGLSTLSKESQGKVGAPSRLPALPPASSTVSSASAKTSSATNNKSDPVSNLLNSLVAKGLISAKTDSSTEVPAEVLIRLEDQSQSITTSGTLPAVSVTGSETVPVISTGDDQPAKGSSSQSTPTEIKNLIGFEFKPSVIRELHLPVIRELLDDFPHHCSICGLRLKHQEQFNRHLEWHAMREREQNDILKASRRWYLRSSDWVDGKDEVSSEYEGIDSIDLHGNKSNRSEEDAMAPSDEDQCLCMLCGELFEDVYCQERDEWMFKGAVYLPVSSSDSETDTNVSSERGPIVHTWCLSESSISNVLAKEQD 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 506 536 - -
Pral5486g00016 1015 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 30 47 - -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 506 538 - -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 1 29 - -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 557 619 - -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 1 76 - -
Pral5486g00016 1015 Pfam CID domain 86 195 IPR006569 -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 808 828 - -
Pral5486g00016 1015 CDD CID_Pcf11 82 194 IPR047415 -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 729 754 - -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 674 717 - -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 208 271 - -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 208 229 - -
Pral5486g00016 1015 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 32 1007 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pral5486g00016 1015 SMART 558neu5 80 202 IPR006569 -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 357 378 - -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 237 264 - -
Pral5486g00016 1015 FunFam polyadenylation and cleavage factor homolog 4 74 202 - -
Pral5486g00016 1015 ProSitePatterns Zinc finger C2H2 type domain signature. 863 883 IPR013087 -
Pral5486g00016 1015 Gene3D - 74 202 IPR008942 -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 557 642 - -
Pral5486g00016 1015 MobiDBLite consensus disorder prediction 664 754 - -
Pral5486g00016 1015 SUPERFAMILY ENTH/VHS domain 79 205 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5486g00016 Pral-Chr5486 145621 154082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5486g00016 76 399 C2H2 Transcription Factor Family AT4G04885 39.535 4.33e-59 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5486g00016 CID 6.6e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5486g00016 K14400 - gmx:100788958 974.541