Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5486g00015 ATGGAGATGGATAGCTCGCGTAGACCGTTTGATAGATCGAGAGAGCAAGGTATCAAGAAACCCCGACTGACCGACGAGCTCGAGCGTGGCTCTAATTCCAGTGTTCGATCGTTGCCTCAGCGACAAGTAGCTTCTGGAGTTAATTCATTGGCCCCAGCAAGGTTTAGAACAAATGACAGAGATTCCGAAAGCATCGACTCTGGTCGCGGTGGATACCAGCCCCAACCGCTCCACCACGAGCTTGTGAATCAGTACAAAACCGCACTTGCTGAGCTAACATTCAATTCTAAACCGATAATTACCAACTTGACTATAATTGCAGGCGAGAATCTTTATGCCGCGAAGGCAATTGCTGCCACTGTTTGTGCTAACATTCTAGAGGTTCCCACTGAACAAAAGCTGCCATCTCTTTATCTTTTGGACAGTATTGTAAAGAATATTGGGCGGGACTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAGGCATACAAACAGGTTGATTCCACAATCCATTCAAGTATGAGGCACCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCCCAGACCCTCCAGATTATTGAGAAGGAACTCGGCTTCACTCCTGCTGTCAATGGTTCATCTACTGCATCTACACTGAGGAGTGACTCACAGTCACAACGACCACAGCATAGCATCCATGTGAATCCTAAATATTTGGAGAGGCAGCGTCTTCAGCAGTCTGGCAGGATTAAAGGAACAGCTAATGATATTGCTGGGACTATTACAAGCTCTAGTGATGGTGCAGAAAGGCCAGATAGAGCATTAGGTGCAGCACGACCATGGGTGGATTCCAGTGCTGACATGCATAACATTCAGGGCTCTAATAGAGATTCGTATAATGATTCTGTTCCTGAAAAGGGCATTGGTACATCCTATGGAGGCAATGAATATGGCTCTGATCTTTCAAGGAATTCAGGTTTGGGTATTGGAAGAGCTGGTGGCAGGACCTCTGAGTTAGCACGTGACAAAGCTTGGTACAAAGCAGGCAGCAATGCTGCAGACATGATGTCTGCCCAAAGGAATGGTTTCAGTCTCAAGCGTAGCTTATCAAATCATGAAGCACCAAAGTCCATCAACTTGGATGAACATAATCAACCAACACAAACCATGACTGGCATAAAGAGTAGTGTCTTGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGATGAGGTGAATGCTGGACTGAGTGAGCATGGTGCATCCAATGCCTCTAACAACTTGAGCAAAGAGTGTTGGACTGCTGATGAAGACAATTTGGCAGTTGGAGGTCACCTTCAAAGGACGTTGCATGAAGATAGAGATGTGTCCACCGAAATGAAACGCACCTTTGGTCATCCTTGGAAATCACAGCAGCAGCAGTCATTTGATGAGCTGAATCGTAGGCCATGTCCTTCAGAAGGCATTGGATCTGCTCTTGGAAGGTTGCCAAACATTGTGAATTCTTCTAATGTCAAAATGGGAAATCGGCCTTTCTTGTCAAATGCCACATTAGGATCAGTAGGAACAGTGCGACAACAGCAGTCTCATTCTGTAGGAGCAGAGTCTCCTTGGGAGTCACCTTTGCGACAGCAGTCTCCATCACCATCAGTCAATGTGCCCCATCCTCATGAAATGCAGATCTTGGCAGAGCAAGACCATCCACAGACTCTTAAAACGTCTCAATTTTCAGGACGTTTACGGAGCCAAGATATTCGAGATTCATCATCTGTCCTTCCACGTAATGTTCAGGCTGGTAACTCTCAGAGATCACATCAAAAAGACTTGCAAGGTCCATTGTCTTCAGTGTCTACTTTTCAGCCACGACATCATAGTGCAGCTTCACAGCCACAGGATCTTGGTTCCAATAGTGAAGTGCCTGAGATGAAGGGAAAGATGACCCACTCTAAAGAAACTTCAGAGCAGTCAACTACAAGTTCTATGTTAGCTGCAGTTATGAAGAGTGGAATTTTTACAAGTGGTCAGCATGGCATAAGTTTCTTGGATAGGAGGAACCTTCCATCAAAGTCCGGGGTTCAGCCTGCCCGGCCAAGTGGATCATCTCCTACAACATCAGTTTCTTCAGGGCCTGGGGTTGCGTCTCCATCTCGATTAGGTCCTTCTAATGATGGCCTATCTACTCTGTCAAAAGAATCTCAAGGAAAGGTTGGAGCCCCATCAAGGCTGCCTGCGCTCCCACCAGCTTCCTCTACTGTGAGTAGTGCCTCAGCCAAGACATCAAGTGCCACTAATAATAAATCTGATCCAGTTTCAAACCTTTTAAACTCATTAGTTGCAAAGGGTTTGATTTCTGCAAAAACAGATTCATCTACTGAGGTGCCAGCTGAGGTGCTGATTCGATTGGAAGATCAGAGCCAAAGCATCACCACCAGTGGCACCTTGCCAGCTGTTTCAGTTACTGGTTCTGAAACTGTTCCTGTCATATCTACCGGAGATGATCAGCCTGCAAAAGGTTCCTCCAGCCAATCAACCCCTACAGAAATAAAAAATCTAATTGGCTTTGAGTTTAAGCCCAGTGTGATCCGGGAATTGCATTTACCTGTGATCAGAGAACTATTGGATGATTTCCCTCATCATTGCAGTATTTGTGGCCTTAGGCTTAAACATCAAGAACAATTTAATAGACACTTGGAGTGGCATGCTATGAGAGAGAGAGAACAAAATGATATATTGAAGGCCTCAAGGAGATGGTATTTGAGATCAAGTGACTGGGTTGATGGCAAGGATGAAGTTTCATCTGAGTATGAGGGTATTGATTCCATAGATTTACATGGCAATAAATCAAACAGAAGTGAAGAGGATGCTATGGCTCCATCTGATGAAGATCAGTGCTTATGTATGCTGTGTGGTGAGCTATTTGAAGATGTTTATTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCGGTTTACCTACCTGTCTCCAGTAGTGATAGTGAGACGGATACTAACGTCAGTAGTGAAAGGGGCCCCATTGTTCACACTTGGTGCTTATCAGAGAGCTCCATATCTAACGTTCTTGCAAAGGAACAGGATTAG 3099 0.4511 MEMDSSRRPFDRSREQGIKKPRLTDELERGSNSSVRSLPQRQVASGVNSLAPARFRTNDRDSESIDSGRGGYQPQPLHHELVNQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIAATVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYKQVDSTIHSSMRHLFGTWKGVFPPQTLQIIEKELGFTPAVNGSSTASTLRSDSQSQRPQHSIHVNPKYLERQRLQQSGRIKGTANDIAGTITSSSDGAERPDRALGAARPWVDSSADMHNIQGSNRDSYNDSVPEKGIGTSYGGNEYGSDLSRNSGLGIGRAGGRTSELARDKAWYKAGSNAADMMSAQRNGFSLKRSLSNHEAPKSINLDEHNQPTQTMTGIKSSVLSSSWKNSEEEEYMWDEVNAGLSEHGASNASNNLSKECWTADEDNLAVGGHLQRTLHEDRDVSTEMKRTFGHPWKSQQQQSFDELNRRPCPSEGIGSALGRLPNIVNSSNVKMGNRPFLSNATLGSVGTVRQQQSHSVGAESPWESPLRQQSPSPSVNVPHPHEMQILAEQDHPQTLKTSQFSGRLRSQDIRDSSSVLPRNVQAGNSQRSHQKDLQGPLSSVSTFQPRHHSAASQPQDLGSNSEVPEMKGKMTHSKETSEQSTTSSMLAAVMKSGIFTSGQHGISFLDRRNLPSKSGVQPARPSGSSPTTSVSSGPGVASPSRLGPSNDGLSTLSKESQGKVGAPSRLPALPPASSTVSSASAKTSSATNNKSDPVSNLLNSLVAKGLISAKTDSSTEVPAEVLIRLEDQSQSITTSGTLPAVSVTGSETVPVISTGDDQPAKGSSSQSTPTEIKNLIGFEFKPSVIRELHLPVIRELLDDFPHHCSICGLRLKHQEQFNRHLEWHAMREREQNDILKASRRWYLRSSDWVDGKDEVSSEYEGIDSIDLHGNKSNRSEEDAMAPSDEDQCLCMLCGELFEDVYCQERDEWMFKGAVYLPVSSSDSETDTNVSSERGPIVHTWCLSESSISNVLAKEQD 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5486g00015 1032 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 32 1024 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 681 771 - -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 574 636 - -
Pral5486g00015 1032 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 30 47 - -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 1 29 - -
Pral5486g00015 1032 SUPERFAMILY ENTH/VHS domain 79 205 IPR008942 -
Pral5486g00015 1032 ProSitePatterns Zinc finger C2H2 type domain signature. 880 900 IPR013087 -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 1 76 - -
Pral5486g00015 1032 CDD CID_Pcf11 82 194 IPR047415 -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 208 271 - -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 574 659 - -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 208 229 - -
Pral5486g00015 1032 SMART 558neu5 80 202 IPR006569 -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 825 845 - -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 237 264 - -
Pral5486g00015 1032 FunFam polyadenylation and cleavage factor homolog 4 74 202 - -
Pral5486g00015 1032 Gene3D - 74 202 IPR008942 -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 523 553 - -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 691 734 - -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 746 771 - -
Pral5486g00015 1032 MobiDBLite consensus disorder prediction 523 555 - -
Pral5486g00015 1032 Pfam CID domain 86 195 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5486g00015 Pral-Chr5486 145621 154082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5486g00015 76 416 C2H2 Transcription Factor Family AT4G04885 38.416 3.25e-56 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5486g00015 CID 6.8e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5486g00015 K14400 - gmx:100788958 1004.59