Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5486g00013 ATGGACTCTACTCCTACTACAGCTACAAGAAGAAGAAGGGTCGACGAAGATCCTCCACCGCCTTTCTCCTATCCTTCAAAGATTTTTCTCGAACCCCTTGTCGGCAGCATACGCTATTACTACTGTGACCTTCCCAAACTTATAAAAACCTGGGCAAATCGGCTCCTGGCTGATCATTCTTTTATCTTTTTTGCGTCTTGTGAACTAGTACACTGTTTGGTCCCCGCGACCAACATGAACCCGAACGACGAAGGTCAACCAAATTCTCCAAAGAGGTCGAAGGGTAAAGCTCCGGCTGACATGTCTTCTTCGGGTCATTTGGAGCAGGAAACATATGGATTCTCTCTCATGGAATTAAGTTCTGGAGCATTCGGAGATGCCTCAGCTGGTCTCTCAATGGTGGACATTGGCCTTTCTGGCCATCCTCCTTCGTCTTTGTATGATTCTCCTTTCATGGAATTTAGAGCATTCTCAACCATGAGTCCGACATCTCTGGCTTCGCCTCCTCCTCCTCCTGCTTCTGTCAGTGATGAGAGAGCTCCTTCGGTACCAACAACTATTAAGGAGGAGACTGGATTAATAGAAACAAGCGGTGAGTTGGAGGACGTTGATGTGCCACAGCCGCTTGACTGTTTACAGGAGAATCCGATTCCGCCATTTCTATGGAAAACTTACGATCTGGTGGATGATCCATCTCTGGATCCAATCATATCATGGGGCTCGGCCGGTGCTAGTTTCGTGGTATGGGACCCTGTGGAATTTGCGAGGATCGTGTTGCCAAGAAATTTCAAGCATAACAATTTCTCCAGTTTTGTCCGCCAGCTTAATACTTATGGATTCCGCAAGATTGATCCTGATAAGTGGGAGTTTGCGAATGAAGGTTTCAAGCAAGGGAAGAGACATCTATTGAAGAACATACAAAGGCGTAGATCACTGCAATCCCAGCATGCTGTTAATGTTGGGCCATCCACTGAAGCAGGAAAGTCTGGGGTTGAGATCGAGATAGGAAGACTGAGAAAGGAGAGAAGTATGTTAGTCCAAGATTTGGTTGACTTGCAGCAACAACAGAGAAGGACTGTTCAGCAGGCGGGACAAGTGAGCCAGAGGCTGGAGTCTGCAGAGCAGAGACAGAAACAGATGGTTTCTTTCTTAGCGAAGCTATTTCAAAATCCAGCATTTTTAGCCCGCCTGAGGCAAAAGAAGGAACCGACAGGTATAGGTTCTCCCAGAGTGAGAAGGAAGTTTGTCAAGCAGCACCAGCACGAAACAGGAATATCAGGCTCTTTGAATGAAGGGCAGATTGTAAAATACCAACCTGATTGGAGAGACATTACCAACCCTTCGGAAACACCGGTACTAAATCCAATTTCTACCGAAGAGTCTCCTGAGTACCCTGCACAGAGTTGGGCAAGAGAACTTGCTTCAGTAGCAGAAAATCCGTATGTGCAACCTGATGTTGCTGTATCAGATGAATTGGCTGTACCTGGTGAAATAATGACAACTCCAGAGATCATAGGAGAAGGATCGTCAAGCTTACGGCTTGAAGATCCTCTTTGGAAAGGAAAAAACGTCATGAGACCAGATCAAGAAGTTATCCCAGAGGATCTGAGCAGGGAGAAAAGTTTTTCAATGTTTTACCCGCCTGAAGCTGAAAGCGTCATTAAACAAGATGTATGGAACCCGGGCTTTAACGTTAGCAGTGCTACTCCTAGCTCTGTGAATGAGCTGTGGGACAATCCAATTCCAATCAATTATGAAGTGCCGGAATTTGGAGTGACAGGCGGCATGTCAGACCTCTGGGATGTGAGCTATATGCAAGAAACAGGAAATTCAGGCTTCGATGTCGATAAGTGGCCAGCTGAAGAGTTCCCTCACAATGAAACAGAAGATGAGGCTGATCGCCCGAAAGATGATAGATCTAAGAATGTCGATCCATAG 1938 0.4623 MDSTPTTATRRRRVDEDPPPPFSYPSKIFLEPLVGSIRYYYCDLPKLIKTWANRLLADHSFIFFASCELVHCLVPATNMNPNDEGQPNSPKRSKGKAPADMSSSGHLEQETYGFSLMELSSGAFGDASAGLSMVDIGLSGHPPSSLYDSPFMEFRAFSTMSPTSLASPPPPPASVSDERAPSVPTTIKEETGLIETSGELEDVDVPQPLDCLQENPIPPFLWKTYDLVDDPSLDPIISWGSAGASFVVWDPVEFARIVLPRNFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFKQGKRHLLKNIQRRRSLQSQHAVNVGPSTEAGKSGVEIEIGRLRKERSMLVQDLVDLQQQQRRTVQQAGQVSQRLESAEQRQKQMVSFLAKLFQNPAFLARLRQKKEPTGIGSPRVRRKFVKQHQHETGISGSLNEGQIVKYQPDWRDITNPSETPVLNPISTEESPEYPAQSWARELASVAENPYVQPDVAVSDELAVPGEIMTTPEIIGEGSSSLRLEDPLWKGKNVMRPDQEVIPEDLSREKSFSMFYPPEAESVIKQDVWNPGFNVSSATPSSVNELWDNPIPINYEVPEFGVTGGMSDLWDVSYMQETGNSGFDVDKWPAEEFPHNETEDEADRPKDDRSKNVDP 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5486g00013 645 PRINTS Heat shock factor (HSF) domain signature 258 270 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5486g00013 645 PRINTS Heat shock factor (HSF) domain signature 271 283 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5486g00013 645 PRINTS Heat shock factor (HSF) domain signature 220 243 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5486g00013 645 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 206 421 IPR027725 -
Pral5486g00013 645 MobiDBLite consensus disorder prediction 610 645 - -
Pral5486g00013 645 SMART hsfneu3 216 309 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5486g00013 645 Coils Coil 335 355 - -
Pral5486g00013 645 Gene3D - 212 310 IPR036388 -
Pral5486g00013 645 MobiDBLite consensus disorder prediction 1 21 - -
Pral5486g00013 645 MobiDBLite consensus disorder prediction 161 183 - -
Pral5486g00013 645 MobiDBLite consensus disorder prediction 79 105 - -
Pral5486g00013 645 FunFam Heat shock transcription factor 1 213 310 - -
Pral5486g00013 645 MobiDBLite consensus disorder prediction 1 18 - -
Pral5486g00013 645 Pfam HSF-type DNA-binding 220 309 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5486g00013 645 SUPERFAMILY "Winged helix" DNA-binding domain 216 309 IPR036390 -
Pral5486g00013 645 MobiDBLite consensus disorder prediction 618 645 - -
Pral5486g00013 645 ProSitePatterns HSF-type DNA-binding domain signature. 259 283 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5486g00013 Pral-Chr5486 137351 140389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5486g00013 160 620 HSF AT5G03720 42.918 2.33e-99 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral5486g00013 HSF_DNA-bind 1.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5486g00013 K09419 - qsa:O6P43_005885 577.015