Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5486g00012 ATGGTAACAAGCCCTATGGAAATGCCCGGTAGGAGATCCAACTATACACTGTTGAACCAAATTCCTGATGATCACTACGGTGGCGGAGCCGTGTCGTCTGGGACAGTTGCGACCTCTTCGTTGTTTGGTTCTTCATCTGGGGATGGGAAGAACATTAAAGGAAAGTTGGACAGAGGATTTGATTGGGACTTGAGCACTGATCATAGAGGGACGCAGCAGGGGAACCGGATCGGAAATTTGTTCCCATCGATCGCGTTGCAGAGGCAGTCTAGTGAGAGCAGTTTTGGCGAAAGCTCGCTATCAGGGGAGTATTATGCTCCGACTCCATCTACCGCAGCTGCGAATGAGATCGATGCCTTTGGGTATATGCATGATGACGGAGTGAGGATTAGTGCAGGGGCTGGTGTTGGGGCCGACTTAAGACCCAAGTTGACGGAAACTACGGTGCGGCCAGCAGGGTCGTCTTCAGGAAAAAGTTGGGCGCAGCAGACGGAGGAGAGTTATCAATTGCAGCTAGCTTTGGCGCTTCGGCTTTCATCTGATGCAACCTGCGCTGATGATCCCAATTTTCTGGATCCAGTCCCAGATGAATCTGCTTTAAGGTCGTCATCCTCAAGCTCTCCGGAGGCTGTGTCACATAGATTCTGGGTTAATGGCTGCCTATCATACTCCGACAAAATTCCTGATGGCTTTTACTTAGTTCGTGGGATGGATCCCTATGTGTGGACTATGTGCACTGATCTGCAGGAGAATGGCCGAATTCCATCTGTTGAATCACTGAAGTCTGTGGATTCTTGTACTGCTTCTTCACTTGAAGTAGTTTTGGTTGATCAGCATAGTGATCCCGGCTTAAAGGAATTGCAAAATAGAGCGCATGGTATTTCTTGTAGCTGTATAACCTCTAAAGAGGTTGTAGACCAGCTTGCGAAGCTGGTTTGCAACCGAATGGGGGGTTCAGCATTTGCTGGGGAGGATGAACTTCTTTCTGTTTGGAGGGAGTGCAGTAATGATCTTAAAGATTGCTTACGATCTGTTGTTGTTCCAATAGGCAGTCTTTCTGTTGGCCTCTGCAGACATCGTGCTACATTATTCAAAGTACTAGCTGACACCATTGATTTACCATGCCGGATTGCAAAGGGCTGTAAATATTGCTCTAGAGACGATGCTTCCTCTTGCCTTGTCCGTTTTGGACTTGATAGGGAATATCTGGTTGATTTAATTAGGAAGCCAGGTTACTTGTGGGAGCCAGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTCCTTCACCCTTGTGCTTTCCAAGACTTAAACCAGCTGAACCTACAATTGATTTCAGGTCACTAGCCAAACAGTATTTCTCTGATTGTCAGTCCCTTGAGCTTGCTTTTGACAATAATTCTGCAGATCAGTTCGATGGGAAGTGCAGGGACAGAAATAACCCTAGGTCAACTTCAAAGGAAAGCAACAAAACAAATGGTCAAGGTTCTGAAGCATTTAACTCATGTAAACCTTCCCAGAACACTGCAGACTCTACGACTTTGGGCAAGGCTCCATTGCCTGTAAATCATAACCCACCTGTTGCCCAAAGAGATATTATGAAGCCTTTAGTACTTACAAACCCAAATGTGGAGGCTGTCGAGGGCAGGCGGTTTGTTGATGGAAGTCAACGTGTTCCTAGTAAAGCAAACATAGAATTAGGCCTTGATATGGAGGATTTGGACATACCATGGAGTGATCTTGTTCTAAAAGAGCGAATAGGATCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCCGAGGTTGCTGTTAAAATTCTGATGGAACAAGATTTTCACGCTGAACGTTTCAAGGAATTTCTGAGGGAGGTTGCAATAATGAAGAGGTTGAGGCATCCAAACATTGTTTTATTTATGGGGGCAGTCACCCAGCCTCCAAACTTATCAATTGTCACGGAATACTTATCAAGGGGTAGCTTGTACAGACTGTTGCATAGACCTGGTGCCAAAGAGATGTTGGGTGAAAGGGTTAGACTCAGCATGGCGTATGATGTGGCAAAAGGAATGAATTATCTTCATAAACGTAACCCACCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTCTTGTTGACAGGAAATATACTGTGAAGGTCTGTGATTTTGGGCTTTCCCGTCTGAAGGCAAATACATTTCTCTCATCGAAGTCGGCTGCTGGGACTCCCGAGTGGATGGCTCCAGAAGTTCTACGGGATGAGCCATCAAATGAGAAGTCAGATGTTTATAGCTTTGGTGTAATTTTGTGGGAGCTTGCAACTTTGCAACAGCCCTGGAGTAATTTGAATCCAGCACAGGTTGTGGCAGCTGTTGGTTTCAAGGGCAAGAGGCCTGAGATCCCACGAGATTTGAATCCTCAAATAGCTGTAATAATTGAGGCTTGCTGGGCCAATGAGCCATGGAAACGTCCTTCGTTTGAAGGTATCATGGATTCTTTGAGATCATTGATCAAACCCCCTGCACCTCAACCTGGTCGTCCACCATTGCTTTCCTGA 2562 0.459 MVTSPMEMPGRRSNYTLLNQIPDDHYGGGAVSSGTVATSSLFGSSSGDGKNIKGKLDRGFDWDLSTDHRGTQQGNRIGNLFPSIALQRQSSESSFGESSLSGEYYAPTPSTAAANEIDAFGYMHDDGVRISAGAGVGADLRPKLTETTVRPAGSSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPVPDESALRSSSSSSPEAVSHRFWVNGCLSYSDKIPDGFYLVRGMDPYVWTMCTDLQENGRIPSVESLKSVDSCTASSLEVVLVDQHSDPGLKELQNRAHGISCSCITSKEVVDQLAKLVCNRMGGSAFAGEDELLSVWRECSNDLKDCLRSVVVPIGSLSVGLCRHRATLFKVLADTIDLPCRIAKGCKYCSRDDASSCLVRFGLDREYLVDLIRKPGYLWEPDSLLNGPSSISFPSPLCFPRLKPAEPTIDFRSLAKQYFSDCQSLELAFDNNSADQFDGKCRDRNNPRSTSKESNKTNGQGSEAFNSCKPSQNTADSTTLGKAPLPVNHNPPVAQRDIMKPLVLTNPNVEAVEGRRFVDGSQRVPSKANIELGLDMEDLDIPWSDLVLKERIGSGSFGTVHRAEWNGSEVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHRPGAKEMLGERVRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDRKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWSNLNPAQVVAAVGFKGKRPEIPRDLNPQIAVIIEACWANEPWKRPSFEGIMDSLRSLIKPPAPQPGRPPLLS 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5486g00012 853 SMART serkin_6 581 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5486g00012 853 FunFam Serine/threonine-protein kinase CTR1 660 845 - -
Pral5486g00012 853 FunFam Serine/threonine-protein kinase isoform 1 571 659 - -
Pral5486g00012 853 MobiDBLite consensus disorder prediction 486 519 - -
Pral5486g00012 853 MobiDBLite consensus disorder prediction 471 528 - -
Pral5486g00012 853 Pfam Ethylene-responsive protein kinase Le-CTR1 209 413 - -
Pral5486g00012 853 Gene3D Phosphorylase Kinase; domain 1 574 659 - -
Pral5486g00012 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672|GO:0006468
Pral5486g00012 853 CDD STKc_MAP3K-like 587 835 - -
Pral5486g00012 853 ProSitePatterns Protein kinases ATP-binding region signature. 587 608 IPR017441 GO:0005524
Pral5486g00012 853 PRINTS Tyrosine kinase catalytic domain signature 743 753 IPR001245 GO:0004672|GO:0006468
Pral5486g00012 853 PRINTS Tyrosine kinase catalytic domain signature 806 828 IPR001245 GO:0004672|GO:0006468
Pral5486g00012 853 PRINTS Tyrosine kinase catalytic domain signature 655 668 IPR001245 GO:0004672|GO:0006468
Pral5486g00012 853 PRINTS Tyrosine kinase catalytic domain signature 762 784 IPR001245 GO:0004672|GO:0006468
Pral5486g00012 853 PRINTS Tyrosine kinase catalytic domain signature 696 714 IPR001245 GO:0004672|GO:0006468
Pral5486g00012 853 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 186 838 - -
Pral5486g00012 853 ProSiteProfiles Protein kinase domain profile. 581 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5486g00012 853 Pfam Protein tyrosine and serine/threonine kinase 582 835 IPR001245 GO:0004672|GO:0006468
Pral5486g00012 853 MobiDBLite consensus disorder prediction 471 485 - -
Pral5486g00012 853 Gene3D Transferase(Phosphotransferase) domain 1 660 844 - -
Pral5486g00012 853 SUPERFAMILY Protein kinase-like (PK-like) 568 834 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5486g00012 Pral-Chr5486 124125 133325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5486g00012 6 851 MAP Kinase Kinase Kinase AT5G03730 68.648 0.0 1035
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Pral5486g00012 PK_Tyr_Ser-Thr 9.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5486g00012 K14510 - qsa:O6P43_009518 1255.35