Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5486g00002 ATGAACAAGCCTTACGCATTAAACCTGGCTTTCGCCTTCGCCTTCACTTTGGCTTTCCTCTGTTTTACAACGTCTCTGTGTTCAGCTCAGAATGACACCCAAGTGCTTACTCTGTTCCGCCTCCAGACCGACGCTCATGGCTATCTCCTCTCTAACTGGACCGGAGGCGACGCCTGCTCCCCCACCTGGCGCGGCGTCTACTGCTCCCCCAACGGTCGAGTCGTCGCCCTTTCTCTCCCTTCCCTCAATCTCCGAGGACCTATTGACTCGCTCTCATCGCTTGTGCACCTTCGCCTCCTTGACCTCCACGATAATCGTTTAAACGGCAGCATTGCGCCTCTCTCCAACTGCAGCCGCCTCAGGCTCCTTTACCTCTCTCACAACGACTTCTCCGGCGAGATTCCGCCGGGAATAGCATCTCTTAAGCATCTACTGAGGCTTGCTTCTGACAACAACATCCATGGTCCAATTCCCAACGAACTGTCAGCGTTAACTCACCTTCTCACGCTTCGCTTGCAGAACAATGTGCTCTCTGGGCAAGTTCCGGATCTCTCTGTTTCGCTCGTTAATCTCACAGAGCTCAATTTCACCAACAACGAGCTCTACGGACGCTTACCTGATGGAATGTTGAAGAAATTCGGCGACAGAACCTTCTCTGGGAACGAAGCTTTGTGTGGCTCAGCCCCATTCCCGATATGTTCCTTCACAGACGGCCCTCCTTCTGCATCACCGCCGCAGATAGTTCCTTCAAACCCAAGTTCGTTGCCTGAATCTCAAACAAGCATAATTGTCACACCCAAAACCCAACGGCGAAAGGGGTTAAGCCCCGGAGCTATAGTAGCCATAGTGGTGGCGAATTGCGTGGCATTGTTGGTGGTAACCTCTTTCATCGTGGCTCACTGCTGCGCAAGAGGACGAAGCTCAAACTCGATGATGGGAAGTGAAAATGGGAAGAGAAAAAGTGGCAGCAGTGGATCCGGAAGCGAGAAGAAGGGGTACGCCAATAATGGGGGTGCAGATAGCGATGGGACTAGCGGCACAGACCGAAGCAGGCTCGTGTTCTTCGACCGTAGGAATCAATTTGAGCTGGAGGAATTGCTGCGAGCATCGGCGGAGATGTTGGGAAAAGGAAGCTTGGGAACGGTTTACAAGGCGGTGCTTGATGACAGTTCTACTGTGGCGGTGAAGAGGCTTAAGGACGCAAACCCATGCGCCAGGACTGAGTTCGAGCAGTACATGGACATCATCGGAAAGGTCAAGCACCCCAACATTGTCAGATTCAGAGCATATTACTATGCCAAAGAAGAAAAACTTCTTGTCTATGATTATCTCCCCAACGGAAGCTTGCATTCTCTTCTTCATGGAAATCGAGGTCCGGGAAGAATTCCACTAGATTGGACCACAAGAGTAAGCTTGGTGTTAGGTGCGGCAAGAGGGCTGGCTCGTATTCATGCAGAATACAATGCAGCAAAAATACCTCACGGAAACGTCAAATCTTCGAACGTGCTTCTTGACAAGAACGGCGTCGCTTGCATCTCCGACTTTGGCTTGTCCCTATTACTAAACCCTGCTCACGCCATTGCAAGATTGGGCGGATACAGAGCACCAGAACAAGAACAAGTGAAGAGGCTGTCTCAGCAAGCAGACGTCTACGGTTTCGGAGTCCTACTGTTGGAAGTTCTCACAGGCAGAGCTCCTTCGCAGTACCCTTCTCCGACCCGACCCTCGGTCGACCAAGAAGAACAGGACGTGGATCTTCCCAAATGGGTTCGTTCCGTCGTGAAGGAAGAGTGGACAGCGGAAGTGTTTGATCAAGAACTGTTGCGTTACAAGAACATAGAGGAAGAGCTGGTTTCAATGCTGCATGTGGGGTTGGCTTGTGTGGCTTCACAGCCAGAGAAGAGGCCAACCATGGCGGAAGTGGCTAAGATGATAGAGGAGATAAGGGTGGAACAATCTCCATTAGCAGAGGACTATGATGAATCGCGTAATTCACTTTCACCATCCCTCGCGACCACCGAAGATGGCCTCCCTTGA 2037 0.5155 MNKPYALNLAFAFAFTLAFLCFTTSLCSAQNDTQVLTLFRLQTDAHGYLLSNWTGGDACSPTWRGVYCSPNGRVVALSLPSLNLRGPIDSLSSLVHLRLLDLHDNRLNGSIAPLSNCSRLRLLYLSHNDFSGEIPPGIASLKHLLRLDXSDNNIHGPIPNELSALTHLLTLRLQNNVLSGQVPDLSVSLVNLTELNFTNNELYGRLPDGMLKKFGDRTFSGNEALCGSAPFPICSFTDGPPSASPPQIVPSNPSSLPESQTSIIVTPKTQRRKGLSPGAIVAIVVANCVALLVVTSFIVAHCCARGRSSNSMMGSENGKRKSGSSGSGSEKKGYANNGGADSDGTSGTDRSRLVFFDRRNQFELEELLRASAEMLGKGSLGTVYKAVLDDSSTVAVKRLKDANPCARTEFEQYMDIIGKVKHPNIVRFRAYYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRVSLVLGAARGLARIHAEYNAAKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPAHAIARLGGYRAPEQEQVKRLSQQADVYGFGVLLLEVLTGRAPSQYPSPTRPSVDQEEQDVDLPKWVRSVVKEEWTAEVFDQELLRYKNIEEELVSMLHVGLACVASQPEKRPTMAEVAKMIEEIRVEQSPLAEDYDESRNSLSPSLATTEDGLP 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5486g00002 679 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 651 IPR046959 -
Pral5486g00002 679 Pfam Protein kinase domain 373 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5486g00002 679 FunFam pollen receptor-like kinase 1 339 444 - -
Pral5486g00002 679 SUPERFAMILY Protein kinase-like (PK-like) 373 647 IPR011009 -
Pral5486g00002 679 ProSiteProfiles Protein kinase domain profile. 369 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5486g00002 679 MobiDBLite consensus disorder prediction 653 679 - -
Pral5486g00002 679 Gene3D Ribonuclease Inhibitor 24 116 IPR032675 -
Pral5486g00002 679 FunFam Nuclear pore complex protein NUP107 29 184 - -
Pral5486g00002 679 CDD STKc_IRAK 375 649 - -
Pral5486g00002 679 SUPERFAMILY L domain-like 31 210 - -
Pral5486g00002 679 Gene3D Phosphorylase Kinase; domain 1 344 444 - -
Pral5486g00002 679 MobiDBLite consensus disorder prediction 309 346 - -
Pral5486g00002 679 Gene3D Transferase(Phosphotransferase) domain 1 445 669 - -
Pral5486g00002 679 ProSiteProfiles Leucine-rich repeat profile. 96 118 IPR001611 GO:0005515
Pral5486g00002 679 Gene3D Ribonuclease Inhibitor 117 234 IPR032675 -
Pral5486g00002 679 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Pral5486g00002 679 MobiDBLite consensus disorder prediction 237 259 - -
Pral5486g00002 679 MobiDBLite consensus disorder prediction 309 332 - -
Pral5486g00002 679 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 445 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5486g00002 Pral-Chr5486 17154 20014 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5486g00002 25 675 Receptor kinase-like Gene Family AT2G36570 67.576 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pral5486g00002 Pkinase 8.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5486g00002 - - qsa:O6P43_009504 1013.83