Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5485g00043 ATGGCGGAATCGGTTTCTGGTGATTCCTCCAACCACACTACTCCGGCACCGGCTCCGGCTCACAAAAGCTGGGCTGACGAGGTGGAAGAAGAAGTTCCAAAAGAAACGAGTGAAGCCACTGAGAGCTCGTCGACAGTCTCGGCCCTTAACGTTGATGAATTAACAATCGACGAGAAAAAGAAGAGTCCCAAGGTTTTGGACGAACCCGATGATTCCAGTATTCAAGCGGTTTCATCGGGCGATACTCCGTATAATTCAGCGAGTACCTTTGAAGATTTAAATCTATCCCCGGAATTGCTAAAGGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAGATTCAAGCTATCAGTTTGCCGATGGTTCTGAACCCTCCTTACAAGGATTTGATCGCTCAGGCACATAATGGATCTGGCAAGACAACTTGTTTTGTGCTTGGGATGCTGAGCCGTGTTGATCCCAAGGTGCAAGCCCCTCAGGCCCTTTGCATTTGTCCAACAAGAGAATTGGCTATTCAGAATATGGAAGTTCTTCGAAAGATGGGGAGGTACACAGGGATTGGTTCTGAATGTGCCATTCCTACAGACAGCAGAGATTCTATTCCAATATCAAAACGACCACCCATAATGGCACAAGTAGTGATTGGGACTCCTGGCACGATTAAGAAATGGATGTCATATAAGAAGCTGGGTGTAAGCAGATTGAATATTTTAGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTCAAAGATGATTCCTTGAGGATAATGAAGGAAATAGAGAAAGTCAATCTGCATTGTCAGGTTCTTCTTTTTTCAGCTACCTTTAATGACACTGTCAAGAATTTTGTTTCAAGGGTAGTTAAGAAGGATCATAATCAACTTTTTGTGAAGAAAGAAGAACTGTCCTTACAGGCAGTGAAGCAATACAAGGTGAACTGTCCCGATGAGCTCTCTAAGATTGATGTGATCAGAGATTACATATTTGAGATAGGAGAGAATGTTGGGCAGACTATTGTATTTGTGCGCACAAGAAACAGTGCTAGTATGCTGCATAAATCACTGGCAGATTTGGGGTATGAAGTTACTTCCATACAAGGTGCTCTTGACAATAATGAGAGAGACAAGATTGTCAAGGAGTTCAGGGATGGTTTAACTCAAGTTCTTATATCTACTGATGTTCTTGCTCGAGGTTTTGATCAGCAACAGGTGAATTTGGTTATCAATTACGATCTCCCTGTAAAACATACTGCTGAGTATACCCGTGAACCAGAGCCTGATTATGAGGTATATTTGCACAGGGTTGGTAGGGCAGGACGTTTTGGGCGAAAGGGTGCTGTATTTAACCTGATATGTGGTGAAAGGGATGAAAATCTTATGGAAAAAATTGAGAAACATTTTGGCACCCGTGTAGCTGAGGTCCAACAAAGAAACGTTGATGATTATAAACGCGCTCTTAGAGAGGCTGGTTTACTGCAATAA 1494 0.427 MAESVSGDSSNHTTPAPAPAHKSWADEVEEEVPKETSEATESSSTVSALNVDELTIDEKKKSPKVLDEPDDSSIQAVSSGDTPYNSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMVLNPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNMEVLRKMGRYTGIGSECAIPTDSRDSIPISKRPPIMAQVVIGTPGTIKKWMSYKKLGVSRLNILVFDEADQMLAEDGFKDDSLRIMKEIEKVNLHCQVLLFSATFNDTVKNFVSRVVKKDHNQLFVKKEELSLQAVKQYKVNCPDELSKIDVIRDYIFEIGENVGQTIVFVRTRNSASMLHKSLADLGYEVTSIQGALDNNERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDENLMEKIEKHFGTRVAEVQQRNVDDYKRALREAGLLQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5485g00043 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 298 IPR014001 -
Pral5485g00043 497 MobiDBLite consensus disorder prediction 1 17 - -
Pral5485g00043 497 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 467 - -
Pral5485g00043 497 SMART ultradead3 108 314 IPR014001 -
Pral5485g00043 497 Gene3D - 308 490 IPR027417 -
Pral5485g00043 497 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 88 117 IPR014014 GO:0003724
Pral5485g00043 497 Pfam DEAD/DEAH box helicase 114 286 IPR011545 GO:0003676|GO:0005524
Pral5485g00043 497 MobiDBLite consensus disorder prediction 53 68 - -
Pral5485g00043 497 Pfam Helicase conserved C-terminal domain 325 446 IPR001650 -
Pral5485g00043 497 Gene3D - 67 305 IPR027417 -
Pral5485g00043 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 463 IPR027417 -
Pral5485g00043 497 MobiDBLite consensus disorder prediction 72 89 - -
Pral5485g00043 497 SMART helicmild6 353 446 IPR001650 -
Pral5485g00043 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 494 IPR001650 -
Pral5485g00043 497 MobiDBLite consensus disorder prediction 1 89 - -
Pral5485g00043 497 CDD SF2_C_DEAD 311 455 - -
Pral5485g00043 497 CDD DEADc_DDX19_DDX25 95 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5485g00043 Pral-Chr5485 266100 270936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5485g00043 89 478 Eukaryotic Initiation Factors Gene Family AT1G72730 36.272 2.00e-69 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5485g00043 K18655 - qsa:O6P43_010208 753.051