Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5485g00037 ATGAACAGCAACAGCAACACCAACAACGTTGAAGGGCAAGGCCAACTGGGCTACTTCGTGAACCCTCTCATCATCTCCGGCGCCGGCATCATCTGCTCCTGCGTCGCCCTAGCCACGTACCACTTCATCCTCTTCAGGCTCTGCCTTCAAGGCCGACGACAGTTGCAGCAAATCCCTCAGCCAATAAGTCCGCCCCCCGAGGACATTCCCTGCGGCGTCGACCCTGAAATCCTCAAGAAAATCCCAATTCTGCCTTACTCTCACAAGAAAGATGACGCCTTTCGTTTGGACCAAACTGAATGCGTTATTTGCTTGGGCGAATTGCAGGATGGAGAAAAGGTTCGGTTATTGCCTTCTTGTAGTCATGCCTTTCACATACCTTGCATCGATCTCTGGTTCGCTCAAAATTCCAATTGTCCCATTTGTCGAGCGCCCTTAATTATAGCCCCTCCGCCGTCCCTGCCTGTGGCTTCAGAAACTGTTGTTGATGCTGAACCAAGGGTCTGTCATATTCAAAGTGATCACAACATTGCCGCTTCTGGTTCGACGTCACGGGCCCCTCCCGGCGCCGCCACGCTTCAGCACTCTCTCTCTGTGGCGTATCGTCACGAGCAGGAAAAGCCTCAGGATTTGATGGTAGGGATGAAGAGGTCTCTGTCCATGGATCATTCGTCGTATGTTTCCGTCAGCATACAAAGAGACGAGGCAAATAAAGCTGCTGCTTCTTCTTCTTCTTCGCCCTCTGTCGCTGCAGGGATTGGGATTGCGCACGCTAAAGCGCTTGATCACGTGTCGTCCATGTTGATGATGTCTTTTGCGCAGTTTCGGAATAGTCGAAATGATAGATCCAAAGGCATTCTACCGAATTGA 870 0.5138 MNSNSNTNNVEGQGQLGYFVNPLIISGAGIICSCVALATYHFILFRLCLQGRRQLQQIPQPISPPPEDIPCGVDPEILKKIPILPYSHKKDDAFRLDQTECVICLGELQDGEKVRLLPSCSHAFHIPCIDLWFAQNSNCPICRAPLIIAPPPSLPVASETVVDAEPRVCHIQSDHNIAASGSTSRAPPGAATLQHSLSVAYRHEQEKPQDLMVGMKRSLSMDHSSYVSVSIQRDEANKAAASSSSSPSVAAGIGIAHAKALDHVSSMLMMSFAQFRNSRNDRSKGILPN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5485g00037 289 SUPERFAMILY RING/U-box 100 149 - -
Pral5485g00037 289 CDD RING-H2_EL5-like 100 143 - -
Pral5485g00037 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 148 IPR013083 -
Pral5485g00037 289 Pfam Ring finger domain 100 143 IPR001841 -
Pral5485g00037 289 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Pral5485g00037 289 SMART ring_2 101 142 IPR001841 -
Pral5485g00037 289 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 20 151 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5485g00037 Pral-Chr5485 226616 233720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5485g00037 23 146 C3H Transcription Factor Family AT1G04360 34.307 3.26e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5485g00037 - - pcin:129292926 414.461