Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5485g00034 ATGAAGCAAGAATTGGAATCGGAGATTGCTCTCGATATTCACTCTCTGAATCAATGTGATGAAGTCGTTCCTACTCATCCTTCTGAAATTGACGCTGGTTTAGAGTCTCAGTTGATGTTTTCTGTTGAAGTTTCTGAGAATCCCGGGGGTATAGTTAAGAGTTCTGTTGCAAATGGTTATATTGTTTATACTCGAATGAAGAAGTCTCGGCATTTGTGCAATGGGTCTTCTGAGAACGGGTCACTTAAGAGACTCAAGACCTCTGAAGATCGGGACTCAAATGCAGACCTTCCAGCTGTCGGTGGCGGAGATGATGTAGGGGTAAATAATGTAGAAAAAAATTTCGAATCTGAGGTTGTTTGCCATTTGGAAAAGGGTATTAGGTGTACTGAATGGAAGAACGAGCCCGCGCAGTTTCTTGCTGGGGAAGGTGGCTCCAATAAGGCTCCTGCTGAGCTTTTTAACAACAGTGAGGTACAGAAAAATGTAAATATAACAGTGAAGCGGTTTACGCGATCAGCATTGAAGCCAAAGGTTGAATGCAGTGATGAGACGGCTACCGCTCCAGAAGCTGCGCAGACAGCAAATAATAGACCAGATGAGAAAGAGACTGCTGCTTTAAGTGCATCAACGCCGCGAAGTAAGCTGGAACTAAAAATGTCCAAGAAGATCGTGCTCAGCAAGAAGCCTATGACTGTCAAGGAACTCTTTGATACTGGTTTACTGGATGGGGTTTCAGTAGTTTATATGGGCGGCAAGGCTTCTGGCCTGCGTGGTGTTATTGCCGATGGAGGGATCTTGTGCTCTTGTTGTCTGTGCAATGGGCGCAAGGTTATTCCGCCTTCCCAATTCGAGATTCATGCTTGCAAATCATATAGGCGAGCAGCACAGTACATTTGCTTTGAAAACGGAAAGAGCCTGCTTGAATTATTGAGAGCATGCAGAGGAACTCCGCTGCATACATTGGAGACGACCATTCAAAATTTTGTTTGTTCTCTACCTCAAGAGAAATATTATACATGTAAAAGGTGCAAAGGATGTTTTCCCTCTTCACGAGTGGAGAAAGTAGGGGCTATCTGTAAAACTTGTGTGGAATCAAAGAAATCTGGAGACAGTTTTAGTGACACGGTTGGCATAAGAGTCAGGTCTCCAAGAGCAGTTCCAGCCTCCAAACCGTTGACTGATACTGAGCTGTGTAACTCGTCACAAATTAACAAACATTGGAAGAAAAGAACAAGAACAACAAATCGGGTTAGCAGCTCAAAGTCTTCTGAGACTGCTTCTTTGTCTGTCCTGTCACGAAAGAAGTCTCCACAGAGGTTGAAGAAGAAGTCAACAAAAATTTCAGTAAAACTGGAGACCCCACTAATTTCGTCAGACTCAAAGTGTTTATCTTCACAAGATAAGACTCAATGGAAGATCACTAAAAAGGATCAGCGGTTACATAAATTAGTTTTTGAAGAAGGTGGATTGCCTGATGGAACAGAAGTAGCTTATTATGGACGTGGACAGAAATTGCTTGAGGGTTACAAAAAGGGCTTTGGAATATTTTGTCGGTGCTGCAACACAGAGGTCAGCCCATCACAATTTGAGGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACTTCAAATGGGGTGTCTCTCCATGAATTAGCAATTTCTCTTTCCAAAGGCCGCAAGTACTCTGCAAAGGACAATGATGATCTTTGCATTATTTGCTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGCGCATCTCTATCAAGCATTCCACGCGGTGACTGGTACTGTAAGTTTTGCCAAAACATGTTCCAGAGGGAAAGATTTGTAGCGCACAATGCCAATGCTGTGGCTGCTGGGAGGGTTGATGGGGTTGATCCTATTGAACAGATAACCAAGAGATGCATTCGCATTGTCAAAGACATTGAAGCTGAGCTGAGCGGCTGTGCTTTATGCGGGGGTTATGACTTCAGCAAGTCAGGATTTGGTCCTCGCACTATCATACTATGCGACCAGTGTGAAAAGGAATATCATGTAGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAATTGCCAGAAGGAAATTGGTTTTGTTGCACTGATTGCAACAGAATACATTCTACTTTGCAGAAGTTCTTGGTTAGGGGGGCTGAGAAACTTCCTGACTCTCTCGTGAATGTTATAAAGACAAAGCAAGAGGAAAAAGGTTTGCAGCCTTTTAATGACATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACCAGGCCATTGCTATTAGAGGCTGTTTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAACTAGTGGACGTGACCTTATCCCAGCCATGGTTTATGGAAGGAATGTGCGGAGTCAAGAGTATGGAGGAATGTATTGTGCAATATTATCGGTCAATTCAACTGTTGTATCAGCTGGCATGCTTCGAATTTTTGGTAAAGATGTGGCTGAACTTCCTTTAGTTGCAACAAGCAATGGTAATCATGGAAAGGGCTATTTCCAATTACTCTTCACCTGCATTCAGAGACTGCTGGCATTGTTGACCGTAAAGAAGCTTGTGCTACCAGCTGCTGAGGAAGCAGAATCCATATGGACAGATAAATTTGGGTTCCACAAGATGAAACCAGAGCAGATTAGCGACTGTAGAAGGAACTACAGTCAGATTTTGACATTCCAAGGGACATCCATGCTTCAAAAAATGGTTCCGCCCTGTCAAGTCTTGAACGTGAAAGAGGAAAACTCTTAG 2835 0.4321 MKQELESEIALDIHSLNQCDEVVPTHPSEIDAGLESQLMFSVEVSENPGGIVKSSVANGYIVYTRMKKSRHLCNGSSENGSLKRLKTSEDRDSNADLPAVGGGDDVGVNNVEKNFESEVVCHLEKGIRCTEWKNEPAQFLAGEGGSNKAPAELFNNSEVQKNVNITVKRFTRSALKPKVECSDETATAPEAAQTANNRPDEKETAALSASTPRSKLELKMSKKIVLSKKPMTVKELFDTGLLDGVSVVYMGGKASGLRGVIADGGILCSCCLCNGRKVIPPSQFEIHACKSYRRAAQYICFENGKSLLELLRACRGTPLHTLETTIQNFVCSLPQEKYYTCKRCKGCFPSSRVEKVGAICKTCVESKKSGDSFSDTVGIRVRSPRAVPASKPLTDTELCNSSQINKHWKKRTRTTNRVSSSKSSETASLSVLSRKKSPQRLKKKSTKISVKLETPLISSDSKCLSSQDKTQWKITKKDQRLHKLVFEEGGLPDGTEVAYYGRGQKLLEGYKKGFGIFCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQRERFVAHNANAVAAGRVDGVDPIEQITKRCIRIVKDIEAELSGCALCGGYDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCTDCNRIHSTLQKFLVRGAEKLPDSLVNVIKTKQEEKGLQPFNDIDVRWRLLNGKIASPETRPLLLEAVSIFHECFDPIVDSTSGRDLIPAMVYGRNVRSQEYGGMYCAILSVNSTVVSAGMLRIFGKDVAELPLVATSNGNHGKGYFQLLFTCIQRLLALLTVKKLVLPAAEEAESIWTDKFGFHKMKPEQISDCRRNYSQILTFQGTSMLQKMVPPCQVLNVKEENS 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5485g00034 944 MobiDBLite consensus disorder prediction 74 103 - -
Pral5485g00034 944 MobiDBLite consensus disorder prediction 178 214 - -
Pral5485g00034 944 MobiDBLite consensus disorder prediction 187 214 - -
Pral5485g00034 944 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 562 639 - -
Pral5485g00034 944 Pfam Tify domain binding domain 259 314 IPR032308 -
Pral5485g00034 944 Pfam Tify domain binding domain 509 559 IPR032308 -
Pral5485g00034 944 SUPERFAMILY FYVE/PHD zinc finger 655 719 IPR011011 -
Pral5485g00034 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 562 645 IPR013083 -
Pral5485g00034 944 Pfam PHD-finger 576 617 IPR019787 -
Pral5485g00034 944 CDD PHD1_AIRE 575 615 - -
Pral5485g00034 944 ProSiteProfiles Zinc finger PHD-type profile. 573 618 IPR019787 -
Pral5485g00034 944 SMART PHD_3 575 616 IPR001965 -
Pral5485g00034 944 SMART PHD_3 663 720 IPR001965 -
Pral5485g00034 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 722 IPR013083 -
Pral5485g00034 944 SUPERFAMILY FYVE/PHD zinc finger 564 620 IPR011011 -
Pral5485g00034 944 ProSitePatterns Zinc finger PHD-type signature. 576 615 IPR019786 -
Pral5485g00034 944 MobiDBLite consensus disorder prediction 417 435 - -
Pral5485g00034 944 PANTHER AUTOIMMUNE REGULATOR 105 930 - -
Pral5485g00034 944 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 660 722 - -
Pral5485g00034 944 MobiDBLite consensus disorder prediction 410 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5485g00034 Pral-Chr5485 184422 192233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5485g00034 222 938 PHD Transcription Factor Family AT2G36720 55.495 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5485g00034 TDBD 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5485g00034 - - pcin:129313599 1566.21