Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5485g00033 ATGAAGCAAGAATTGGAATCGGAGATTGCTCTCGATATTCACTCTCTGAATCAATGTGATGAAGTCGTTCCTACTCATCCTTCTGAAATTGACGCTGGTTTAGAGTCTCAGTTGATGTTTTCTGTTGAAGTTTCTGAGAATCCCGGGGGTATAGTTAAGAGTTCTGTTGCAAATGGTTATATTGTTTATACTCGAATGAAGAAGTCTCGGCATTTGTGCAATGGGTCTTCTGAGAACGGGTCACTTAAGAGACTCAAGACCTCTGAAGATCGGGACTCAAATGCAGACCTTCCAGCTGTCGGTGGCGGAGATGATGTAGGGGTAAATAATGTAGAAAAAAATTTCGAATCTGAGGTTGTTTGCCATTTGGAAAAGGGTATTAGGTGTACTGAATGGAAGAACGAGCCCGCGCAGTTTCTTGCTGGGGAAGGTGGCTCCAATAAGGCTCCTGCTGAGCTTTTTAACAACAGTGAGGTACAGAAAAATGTAAATATAACAGTGAAGCGGTTTACGCGATCAGCATTGAAGCCAAAGGTTGAATGCAGTGATGAGACGGCTACCGCTCCAGAAGCTGCGCAGACAGCAAATAATAGACCAGATGAGAAAGAGACTGCTGCTTTAAGTGCATCAACGCCGCGAAGTAAGCTGGAACTAAAAATGTCCAAGAAGATCGTGCTCAGCAAGAAGCCTATGACTGTCAAGGAACTCTTTGATACTGGTTTACTGGATGGGGTTTCAGTAGTTTATATGGGCGGCAAGGCTTCTGGCCTGCGTGGTGTTATTGCCGATGGAGGGATCTTGTGCTCTTGTTGTCTGTGCAATGGGCGCAAGGTTATTCCGCCTTCCCAATTCGAGATTCATGCTTGCAAATCATATAGGCGAGCAGCACAGTACATTTGCTTTGAAAACGGAAAGAGCCTGCTTGAATTATTGAGAGCATGCAGAGGAACTCCGCTGCATACATTGGAGACGACCATTCAAAATTTTGTTTGTTCTCTACCTCAAGAGAAATATTATACATGTAAAAGGTGCAAAGGATGTTTTCCCTCTTCACGAGTGGAGAAAGTAGGGGCTATCTGTAAAACTTGTGTGGAATCAAAGAAATCTGGAGACAGTTTTAGTGACACGGTTGGCATAAGAGTCAGGTCTCCAAGAGCAGTTCCAGCCTCCAAACCGTTGACTGATACTGAGCTGTGTAACTCGTCACAAATTAACAAACATTGGAAGAAAAGAACAAGAACAACAAATCGGGTTAGCAGCTCAAAGTCTTCTGAGACTGCTTCTTTGTCTGTCCTGTCACGAAAGAAGTCTCCACAGAGGTTGAAGAAGTCAACAAAAATTTCAGTAAAACTGGAGACCCCACTAATTTCGTCAGACTCAAAGTGTTTATCTTCACAAGATAAGACTCAATGGAAGATCACTAAAAAGGATCAGCGGTTACATAAATTAGTTTTTGAAGAAGGTGGATTGCCTGATGGAACAGAAGTAGCTTATTATGGACGTGGACAGAAATTGCTTGAGGGTTACAAAAAGGGCTTTGGAATATTTTGTCGGTGCTGCAACACAGAGGTCAGCCCATCACAATTTGAGGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACTTCAAATGGGGTGTCTCTCCATGAATTAGCAATTTCTCTTTCCAAAGGCCGCAAGTACTCTGCAAAGGACAATGATGATCTTTGCATTATTTGCTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGCGCATCTCTATCAAGCATTCCACGCGGTGACTGGTACTGTAAGTTTTGCCAAAACATGTTCCAGAGGGAAAGATTTGTAGCGCACAATGCCAATGCTGTGGCTGCTGGGAGGGTTGATGGGGTTGATCCTATTGAACAGATAACCAAGAGATGCATTCGCATTGTCAAAGACATTGAAGCTGAGCTGAGCGGCTGTGCTTTATGCGGGGGTTATGACTTCAGCAAGTCAGGATTTGGTCCTCGCACTATCATACTATGCGACCAGTGTGAAAAGGAATATCATGTAGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAATTGCCAGAAGGAAATTGGTTTTGTTGCACTGATTGCAACAGAATACATTCTACTTTGCAGAAGTTCTTGGTTAGGGGGGCTGAGAAACTTCCTGACTCTCTCGTGAATGTTATAAAGACAAAGCAAGAGGAAAAAGGTTTGCAGCCTTTTAATGACATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACCAGGCCATTGCTATTAGAGGCTGTTTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAACTAGTGGACGTGACCTTATCCCAGCCATGGTTTATGGAAGGAATGTGCGGAGTCAAGAGTATGGAGGAATGTATTGTGCAATATTATCGGTCAATTCAACTGTTGTATCAGCTGGCATGCTTCGAATTTTTGGTAAAGATGTGGCTGAACTTCCTTTAGTTGCAACAAGCAATGGTAATCATGGAAAGGGCTATTTCCAATTACTCTTCACCTGCATTCAGAGACTGCTGGCATTGTTGACCGTAAAGAAGCTTGTGCTACCAGCTGCTGAGGAAGCAGAATCCATATGGACAGATAAATTTGGGTTCCACAAGATGAAACCAGAGCAGATTAGCGACTGTAGAAGGAACTACAGTCAGATTTTGACATTCCAAGGGACATCCATGCTTCAAAAAATGGTTCCGCCCTGTCAAGTCTTGAACGTGAAAGAGGAAAACTCTTAG 2832 0.4322 MKQELESEIALDIHSLNQCDEVVPTHPSEIDAGLESQLMFSVEVSENPGGIVKSSVANGYIVYTRMKKSRHLCNGSSENGSLKRLKTSEDRDSNADLPAVGGGDDVGVNNVEKNFESEVVCHLEKGIRCTEWKNEPAQFLAGEGGSNKAPAELFNNSEVQKNVNITVKRFTRSALKPKVECSDETATAPEAAQTANNRPDEKETAALSASTPRSKLELKMSKKIVLSKKPMTVKELFDTGLLDGVSVVYMGGKASGLRGVIADGGILCSCCLCNGRKVIPPSQFEIHACKSYRRAAQYICFENGKSLLELLRACRGTPLHTLETTIQNFVCSLPQEKYYTCKRCKGCFPSSRVEKVGAICKTCVESKKSGDSFSDTVGIRVRSPRAVPASKPLTDTELCNSSQINKHWKKRTRTTNRVSSSKSSETASLSVLSRKKSPQRLKKSTKISVKLETPLISSDSKCLSSQDKTQWKITKKDQRLHKLVFEEGGLPDGTEVAYYGRGQKLLEGYKKGFGIFCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQRERFVAHNANAVAAGRVDGVDPIEQITKRCIRIVKDIEAELSGCALCGGYDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCTDCNRIHSTLQKFLVRGAEKLPDSLVNVIKTKQEEKGLQPFNDIDVRWRLLNGKIASPETRPLLLEAVSIFHECFDPIVDSTSGRDLIPAMVYGRNVRSQEYGGMYCAILSVNSTVVSAGMLRIFGKDVAELPLVATSNGNHGKGYFQLLFTCIQRLLALLTVKKLVLPAAEEAESIWTDKFGFHKMKPEQISDCRRNYSQILTFQGTSMLQKMVPPCQVLNVKEENS 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5485g00033 943 MobiDBLite consensus disorder prediction 74 103 - -
Pral5485g00033 943 MobiDBLite consensus disorder prediction 178 214 - -
Pral5485g00033 943 MobiDBLite consensus disorder prediction 187 214 - -
Pral5485g00033 943 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 659 721 - -
Pral5485g00033 943 ProSiteProfiles Zinc finger PHD-type profile. 572 617 IPR019787 -
Pral5485g00033 943 Pfam PHD-finger 575 616 IPR019787 -
Pral5485g00033 943 SUPERFAMILY FYVE/PHD zinc finger 563 619 IPR011011 -
Pral5485g00033 943 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 644 IPR013083 -
Pral5485g00033 943 PANTHER AUTOIMMUNE REGULATOR 105 929 - -
Pral5485g00033 943 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 721 IPR013083 -
Pral5485g00033 943 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 561 638 - -
Pral5485g00033 943 CDD PHD1_AIRE 574 614 - -
Pral5485g00033 943 MobiDBLite consensus disorder prediction 410 439 - -
Pral5485g00033 943 SUPERFAMILY FYVE/PHD zinc finger 654 718 IPR011011 -
Pral5485g00033 943 MobiDBLite consensus disorder prediction 417 435 - -
Pral5485g00033 943 SMART PHD_3 574 615 IPR001965 -
Pral5485g00033 943 SMART PHD_3 662 719 IPR001965 -
Pral5485g00033 943 Pfam Tify domain binding domain 259 314 IPR032308 -
Pral5485g00033 943 Pfam Tify domain binding domain 508 558 IPR032308 -
Pral5485g00033 943 ProSitePatterns Zinc finger PHD-type signature. 575 614 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5485g00033 Pral-Chr5485 184422 192233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5485g00033 222 937 PHD Transcription Factor Family AT2G36720 55.495 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5485g00033 TDBD 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5485g00033 - - pcin:129313599 1570.83