Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5485g00032 ATGAAGCAAGAATTGGAATCGGAGATTGCTCTCGATATTCACTCTCTGAATCAATGTGATGAAGTCGTTCCTACTCATCCTTCTGAAATTGACGCTGGTTTAGAGTCTCAGTTGATGTTTTCTGTTGAAGTTTCTGAGAATCCCGGGGGTATAGTTAAGAGTTCTGTTGCAAATGGTTATATTGTTTATACTCGAATGAAGAAGTCTCGGCATTTGTGCAATGGGTCTTCTGAGAACGGGTCACTTAAGAGACTCAAGACCTCTGAAGATCGGGACTCAAATGCAGACCTTCCAGCTGTCGGTGGCGGAGATGATGTAGGGGTAAATAATGTAGAAAAAAATTTCGAATCTGAGGTTGTTTGCCATTTGGAAAAGGGTATTAGGTGTACTGAATGGAAGAACGAGCCCGCGCAGTTTCTTGCTGGGGAAGGTGGCTCCAATAAGGCTCCTGCTGAGCTTTTTAACAACAGTGAGGTACAGAAAAATGTAAATATAACAGTGAAGCGGTTTACGCGATCAGCATTGAAGCCAAAGGTTGAATGCAGTGATGAGACGGCTACCGCTCCAGAAGCTGCGCAGACAGCAAATAATAGACCAGATGAGAAAGAGACTGCTGCTTTAAGTGCATCAACGCCGCGAAGTAAGCTGGAACTAAAAATGTCCAAGAAGATCGTGCTCAGCAAGAAGCCTATGACTGTCAAGGAACTCTTTGATACTGGTTTACTGGATGGGGTTTCAGTAGTTTATATGGGCGGCAAGGCTTCTGGCCTGCGTGGTGTTATTGCCGATGGAGGGATCTTGTGCTCTTGTTGTCTGTGCAATGGGCGCAAGGTTATTCCGCCTTCCCAATTCGAGATTCATGCTTGCAAATCATATAGGCGAGCAGCACAGTACATTTGCTTTGAAAACGGAAAGAGCCTGCTTGAATTATTGAGAGCATGCAGAGGAACTCCGCTGCATACATTGGAGACGACCATTCAAAATTTTGTTTGTTCTCTACCTCAAGAGAAATATTATACATGTAAAAGGTGCAAAGGATGTTTTCCCTCTTCACGAGTGGAGAAAGTAGGGGCTATCTGTAAAACTTGTGTGGAATCAAAGAAATCTGGAGACAGTTTTAGTGACACGGTTGGCATAAGAGTCAGGTCTCCAAGAGCAGTTCCAGCCTCCAAACCGTTGACTGATACTGAGCTGTGTAACTCGTCACAAATTAACAAACATTGGAAGAAAAGAACAAGAACAACAAATCGGGTTAGCAGCTCAAAGTCTTCTGAGACTGCTTCTTTGTCTGTCCTGTCACGAAAGAAGTCTCCACAGAGGTCAACAAAAATTTCAGTAAAACTGGAGACCCCACTAATTTCGTCAGACTCAAAGTGTTTATCTTCACAAGATAAGACTCAATGGAAGATCACTAAAAAGGATCAGCGGTTACATAAATTAGTTTTTGAAGAAGGTGGATTGCCTGATGGAACAGAAGTAGCTTATTATGGACGTGGACAGAAATTGCTTGAGGGTTACAAAAAGGGCTTTGGAATATTTTGTCGGTGCTGCAACACAGAGGTCAGCCCATCACAATTTGAGGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACTTCAAATGGGGTGTCTCTCCATGAATTAGCAATTTCTCTTTCCAAAGGCCGCAAGTACTCTGCAAAGGACAATGATGATCTTTGCATTATTTGCTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGCGCATCTCTATCAAGCATTCCACGCGGTGACTGGTACTGTAAGTTTTGCCAAAACATGTTCCAGAGGGAAAGATTTGTAGCGCACAATGCCAATGCTGTGGCTGCTGGGAGGGTTGATGGGGTTGATCCTATTGAACAGATAACCAAGAGATGCATTCGCATTGTCAAAGACATTGAAGCTGAGCTGAGCGGCTGTGCTTTATGCGGGGGTTATGACTTCAGCAAGTCAGGATTTGGTCCTCGCACTATCATACTATGCGACCAGTGTGAAAAGGAATATCATGTAGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAATTGCCAGAAGGAAATTGGTTTTGTTGCACTGATTGCAACAGAATACATTCTACTTTGCAGAAGTTCTTGGTTAGGGGGGCTGAGAAACTTCCTGACTCTCTCGTGAATGTTATAAAGACAAAGCAAGAGGAAAAAGGTTTGCAGCCTTTTAATGACATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACCAGGCCATTGCTATTAGAGGCTGTTTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAACTAGTGGACGTGACCTTATCCCAGCCATGGTTTATGGAAGGAATGTGCGGAGTCAAGAGTATGGAGGAATGTATTGTGCAATATTATCGGTCAATTCAACTGTTGTATCAGCTGGCATGCTTCGAATTTTTGGTAAAGATGTGGCTGAACTTCCTTTAGTTGCAACAAGCAATGGTAATCATGGAAAGGGCTATTTCCAATTACTCTTCACCTGCATTCAGAGACTGCTGGCATTGTTGACCGTAAAGAAGCTTGTGCTACCAGCTGCTGAGGAAGCAGAATCCATATGGACAGATAAATTTGGGTTCCACAAGATGAAACCAGAGCAGATTAGCGACTGTAGAAGGAACTACAGTCAGATTTTGACATTCCAAGGGACATCCATGCTTCAAAAAATGGTTCCGCCCTGTCAAGTCTTGAACGTGAAAGAGGAAAACTCTTAG 2823 0.4325 MKQELESEIALDIHSLNQCDEVVPTHPSEIDAGLESQLMFSVEVSENPGGIVKSSVANGYIVYTRMKKSRHLCNGSSENGSLKRLKTSEDRDSNADLPAVGGGDDVGVNNVEKNFESEVVCHLEKGIRCTEWKNEPAQFLAGEGGSNKAPAELFNNSEVQKNVNITVKRFTRSALKPKVECSDETATAPEAAQTANNRPDEKETAALSASTPRSKLELKMSKKIVLSKKPMTVKELFDTGLLDGVSVVYMGGKASGLRGVIADGGILCSCCLCNGRKVIPPSQFEIHACKSYRRAAQYICFENGKSLLELLRACRGTPLHTLETTIQNFVCSLPQEKYYTCKRCKGCFPSSRVEKVGAICKTCVESKKSGDSFSDTVGIRVRSPRAVPASKPLTDTELCNSSQINKHWKKRTRTTNRVSSSKSSETASLSVLSRKKSPQRSTKISVKLETPLISSDSKCLSSQDKTQWKITKKDQRLHKLVFEEGGLPDGTEVAYYGRGQKLLEGYKKGFGIFCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQRERFVAHNANAVAAGRVDGVDPIEQITKRCIRIVKDIEAELSGCALCGGYDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCTDCNRIHSTLQKFLVRGAEKLPDSLVNVIKTKQEEKGLQPFNDIDVRWRLLNGKIASPETRPLLLEAVSIFHECFDPIVDSTSGRDLIPAMVYGRNVRSQEYGGMYCAILSVNSTVVSAGMLRIFGKDVAELPLVATSNGNHGKGYFQLLFTCIQRLLALLTVKKLVLPAAEEAESIWTDKFGFHKMKPEQISDCRRNYSQILTFQGTSMLQKMVPPCQVLNVKEENS 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5485g00032 940 MobiDBLite consensus disorder prediction 74 103 - -
Pral5485g00032 940 MobiDBLite consensus disorder prediction 178 214 - -
Pral5485g00032 940 SUPERFAMILY FYVE/PHD zinc finger 651 715 IPR011011 -
Pral5485g00032 940 MobiDBLite consensus disorder prediction 187 214 - -
Pral5485g00032 940 SMART PHD_3 571 612 IPR001965 -
Pral5485g00032 940 SMART PHD_3 659 716 IPR001965 -
Pral5485g00032 940 MobiDBLite consensus disorder prediction 410 443 - -
Pral5485g00032 940 CDD PHD1_AIRE 571 611 - -
Pral5485g00032 940 SUPERFAMILY FYVE/PHD zinc finger 560 616 IPR011011 -
Pral5485g00032 940 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 656 718 IPR013083 -
Pral5485g00032 940 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 558 635 - -
Pral5485g00032 940 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 558 641 IPR013083 -
Pral5485g00032 940 MobiDBLite consensus disorder prediction 417 443 - -
Pral5485g00032 940 ProSitePatterns Zinc finger PHD-type signature. 572 611 IPR019786 -
Pral5485g00032 940 Pfam Tify domain binding domain 259 314 IPR032308 -
Pral5485g00032 940 Pfam Tify domain binding domain 505 555 IPR032308 -
Pral5485g00032 940 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 656 718 - -
Pral5485g00032 940 PANTHER AUTOIMMUNE REGULATOR 105 926 - -
Pral5485g00032 940 ProSiteProfiles Zinc finger PHD-type profile. 569 614 IPR019787 -
Pral5485g00032 940 Pfam PHD-finger 572 613 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5485g00032 Pral-Chr5485 184422 192233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5485g00032 222 934 PHD Transcription Factor Family AT2G36720 55.177 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5485g00032 TDBD 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5485g00032 - - pcin:129313599 1560.04