Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5485g00031 ATGTTTTCTGTTGAAGTTTCTGAGAATCCCGGGGGTATAGTTAAGAGTTCTGTTGCAAATGGTTATATTGTTTATACTCGAATGAAGAAGTCTCGGCATTTGTGCAATGGGTCTTCTGAGAACGGGTCACTTAAGAGACTCAAGACCTCTGAAGATCGGGACTCAAATGCAGACCTTCCAGCTGTCGGTGGCGGAGATGATGTAGGGGTAAATAATGTAGAAAAAAATTTCGAATCTGAGGTTGTTTGCCATTTGGAAAAGGGTATTAGGTGTACTGAATGGAAGAACGAGCCCGCGCAGTTTCTTGCTGGGGAAGGTGGCTCCAATAAGGCTCCTGCTGAGCTTTTTAACAACAGTGAGGTACAGAAAAATGTAAATATAACAGTGAAGCGGTTTACGCGATCAGCATTGAAGCCAAAGGTTGAATGCAGTGATGAGACGGCTACCGCTCCAGAAGCTGCGCAGACAGCAAATAATAGACCAGATGAGAAAGAGACTGCTGCTTTAAGTGCATCAACGCCGCGAAGTAAGCTGGAACTAAAAATGTCCAAGAAGATCGTGCTCAGCAAGAAGCCTATGACTGTCAAGGAACTCTTTGATACTGGTTTACTGGATGGGGTTTCAGTAGTTTATATGGGCGGCAAGGCTTCTGGCCTGCGTGGTGTTATTGCCGATGGAGGGATCTTGTGCTCTTGTTGTCTGTGCAATGGGCGCAAGGTTATTCCGCCTTCCCAATTCGAGATTCATGCTTGCAAATCATATAGGCGAGCAGCACAGTACATTTGCTTTGAAAACGGAAAGAGCCTGCTTGAATTATTGAGAGCATGCAGAGGAACTCCGCTGCATACATTGGAGACGACCATTCAAAATTTTGTTTGTTCTCTACCTCAAGAGAAATATTATACATGTAAAAGGTGCAAAGGATGTTTTCCCTCTTCACGAGTGGAGAAAGTAGGGGCTATCTGTAAAACTTGTGTGGAATCAAAGAAATCTGGAGACAGTTTTAGTGACACGGTTGGCATAAGAGTCAGGTCTCCAAGAGCAGTTCCAGCCTCCAAACCGTTGACTGATACTGAGCTGTGTAACTCGTCACAAATTAACAAACATTGGAAGAAAAGAACAAGAACAACAAATCGGGTTAGCAGCTCAAAGTCTTCTGAGACTGCTTCTTTGTCTGTCCTGTCACGAAAGAAGTCTCCACAGAGGTTGAAGAAGAAGTCAACAAAAATTTCAGTAAAACTGGAGACCCCACTAATTTCGTCAGACTCAAAGTGTTTATCTTCACAAGATAAGACTCAATGGAAGATCACTAAAAAGGATCAGCGGTTACATAAATTAGTTTTTGAAGAAGGTGGATTGCCTGATGGAACAGAAGTAGCTTATTATGGACGTGGACAGAAATTGCTTGAGGGTTACAAAAAGGGCTTTGGAATATTTTGTCGGTGCTGCAACACAGAGGTCAGCCCATCACAATTTGAGGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACTTCAAATGGGGTGTCTCTCCATGAATTAGCAATTTCTCTTTCCAAAGGCCGCAAGTACTCTGCAAAGGACAATGATGATCTTTGCATTATTTGCTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGCGCATCTCTATCAAGCATTCCACGCGGTGACTGGTACTGTAAGTTTTGCCAAAACATGTTCCAGAGGGAAAGATTTGTAGCGCACAATGCCAATGCTGTGGCTGCTGGGAGGGTTGATGGGGTTGATCCTATTGAACAGATAACCAAGAGATGCATTCGCATTGTCAAAGACATTGAAGCTGAGCTGAGCGGCTGTGCTTTATGCGGGGGTTATGACTTCAGCAAGTCAGGATTTGGTCCTCGCACTATCATACTATGCGACCAGTGTGAAAAGGAATATCATGTAGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAATTGCCAGAAGGAAATTGGTTTTGTTGCACTGATTGCAACAGAATACATTCTACTTTGCAGAAGTTCTTGGTTAGGGGGGCTGAGAAACTTCCTGACTCTCTCGTGAATGTTATAAAGACAAAGCAAGAGGAAAAAGGTTTGCAGCCTTTTAATGACATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACCAGGCCATTGCTATTAGAGGCTGTTTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAACTAGTGGACGTGACCTTATCCCAGCCATGGTTTATGGAAGGAATGTGCGGAGTCAAGAGTATGGAGGAATGTATTGTGCAATATTATCGGTCAATTCAACTGTTGTATCAGCTGGCATGCTTCGAATTTTTGGTAAAGATGTGGCTGAACTTCCTTTAGTTGCAACAAGCAATGGTAATCATGGAAAGGGCTATTTCCAATTACTCTTCACCTGCATTCAGAGACTGCTGGCATTGTTGACCGTAAAGAAGCTTGTGCTACCAGCTGCTGAGGAAGCAGAATCCATATGGACAGATAAATTTGGGTTCCACAAGATGAAACCAGAGCAGATTAGCGACTGTAGAAGGAACTACAGTCAGATTTTGACATTCCAAGGGACATCCATGCTTCAAAAAATGGTTCCGCCCTGTCAAGTCTTGAACGTGAAAGAGGAAAACTCTTAG 2721 0.4329 MFSVEVSENPGGIVKSSVANGYIVYTRMKKSRHLCNGSSENGSLKRLKTSEDRDSNADLPAVGGGDDVGVNNVEKNFESEVVCHLEKGIRCTEWKNEPAQFLAGEGGSNKAPAELFNNSEVQKNVNITVKRFTRSALKPKVECSDETATAPEAAQTANNRPDEKETAALSASTPRSKLELKMSKKIVLSKKPMTVKELFDTGLLDGVSVVYMGGKASGLRGVIADGGILCSCCLCNGRKVIPPSQFEIHACKSYRRAAQYICFENGKSLLELLRACRGTPLHTLETTIQNFVCSLPQEKYYTCKRCKGCFPSSRVEKVGAICKTCVESKKSGDSFSDTVGIRVRSPRAVPASKPLTDTELCNSSQINKHWKKRTRTTNRVSSSKSSETASLSVLSRKKSPQRLKKKSTKISVKLETPLISSDSKCLSSQDKTQWKITKKDQRLHKLVFEEGGLPDGTEVAYYGRGQKLLEGYKKGFGIFCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQRERFVAHNANAVAAGRVDGVDPIEQITKRCIRIVKDIEAELSGCALCGGYDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCTDCNRIHSTLQKFLVRGAEKLPDSLVNVIKTKQEEKGLQPFNDIDVRWRLLNGKIASPETRPLLLEAVSIFHECFDPIVDSTSGRDLIPAMVYGRNVRSQEYGGMYCAILSVNSTVVSAGMLRIFGKDVAELPLVATSNGNHGKGYFQLLFTCIQRLLALLTVKKLVLPAAEEAESIWTDKFGFHKMKPEQISDCRRNYSQILTFQGTSMLQKMVPPCQVLNVKEENS 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5485g00031 906 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 622 684 - -
Pral5485g00031 906 MobiDBLite consensus disorder prediction 35 65 - -
Pral5485g00031 906 Pfam Tify domain binding domain 221 276 IPR032308 -
Pral5485g00031 906 Pfam Tify domain binding domain 471 521 IPR032308 -
Pral5485g00031 906 SUPERFAMILY FYVE/PHD zinc finger 526 582 IPR011011 -
Pral5485g00031 906 MobiDBLite consensus disorder prediction 372 408 - -
Pral5485g00031 906 Pfam PHD-finger 538 579 IPR019787 -
Pral5485g00031 906 ProSitePatterns Zinc finger PHD-type signature. 538 577 IPR019786 -
Pral5485g00031 906 MobiDBLite consensus disorder prediction 379 397 - -
Pral5485g00031 906 PANTHER AUTOIMMUNE REGULATOR 83 892 - -
Pral5485g00031 906 MobiDBLite consensus disorder prediction 149 176 - -
Pral5485g00031 906 ProSiteProfiles Zinc finger PHD-type profile. 535 580 IPR019787 -
Pral5485g00031 906 MobiDBLite consensus disorder prediction 140 176 - -
Pral5485g00031 906 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 684 IPR013083 -
Pral5485g00031 906 SMART PHD_3 625 682 IPR001965 -
Pral5485g00031 906 SMART PHD_3 537 578 IPR001965 -
Pral5485g00031 906 CDD PHD1_AIRE 537 577 - -
Pral5485g00031 906 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 524 607 IPR013083 -
Pral5485g00031 906 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 524 601 - -
Pral5485g00031 906 SUPERFAMILY FYVE/PHD zinc finger 617 681 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5485g00031 Pral-Chr5485 184422 192233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5485g00031 184 900 PHD Transcription Factor Family AT2G36720 55.495 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5485g00031 TDBD 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5485g00031 - - pcin:129313599 1511.89