Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5485g00012 | ATGGATCGAGAATGGGGTTCAAAGCCTGGGAGTGGAGGAGCCGCCTCCGCCCAGAATGAAGCCATCGACCGTCGAGAGCGGCTTCGCCGACTTGCGCTCGAGACTATTGATCTTGCTAAAGACCCCTATTTCATGCGCAATCATCTGGGGAGCTATGAGTGCAAGCTTTGTCTCACATTACACAATAACGAGGGCAATTACTTGGCCCACACACAGGGTAAGCGGCATCAGACTAATCTGGCAAAGAGAGCAGCTCGTGAGGCCAAAGAGGCACCTGCTCAGCCTCAGCCCCACAAGCGTAAAGTCTCGGTTCGCAAGACAGTCAAGATTGGTCGGCCTGGGTACCGGGTGACTAAGCAATTTGATCCAGAGACAAAGCAAAGATCTCTTCTTTTCCAGAGGGTTCAACCCTTTGACAAAAGATTTCAGTATCTTTTGTTTGCAGCTGAACCGTATGAGATAATTGCTTTTAAGGTGCCCAGCACAGAGATTGACAAGTCCACACCAAAGTTTTTCTCGCATTGGGACTCGGACTCAAAAATGTTCACGTTGCAGTTATATTTCAAACCCAAGCCACCAGAGGCAAACAAACCACAGCCTCCATCTACAGCTAATGGCACAGCGGCACCTGGTGTCCCACCAAGGCCTGTGCCGCCGCCTCCTCAAGCTCCGCCACCACCTCCTCCTCCACCACAAGGACTACCTCCTGGTGCAGCTGTTGGAAATCCTCCTAGAGCCCCTCCACCTCCTATGCCTGGATCATTGCCGCCGCCTCCTCCTCCCATGTCAAATGGCCCTACACCTGCACCTCCTGGTGGAATGCCACCTCAACCCCCTGTTGCGAGCGGCTCAGCAGCTAGTTTCAACATGGGTTCTAGGCCCCCATCAATGCCACCGCCCCAAAACTATTTAGCCCAACAAATGCAGGGCCAGGGTATTCGTCCACCTCCACCACCTCCTAGCATGGGATAG | 972 | 0.534 | MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDPETKQRSLLFQRVQPFDKRFQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDSDSKMFTLQLYFKPKPPEANKPQPPSTANGTAAPGVPPRPVPPPPQAPPPPPPPPQGLPPGAAVGNPPRAPPPPMPGSLPPPPPPMSNGPTPAPPGGMPPQPPVASGSAASFNMGSRPPSMPPPQNYLAQQMQGQGIRPPPPPPSMG | 323 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5485g00012 | 323 | Gene3D | - | 133 | 196 | - | - | |
| Pral5485g00012 | 323 | SMART | ZnF_U1_5 | 49 | 83 | IPR003604 | GO:0003676|GO:0008270 | |
| Pral5485g00012 | 323 | SUPERFAMILY | beta-beta-alpha zinc fingers | 48 | 83 | IPR036236 | - | |
| Pral5485g00012 | 323 | MobiDBLite | consensus disorder prediction | 211 | 278 | - | - | |
| Pral5485g00012 | 323 | ProSiteProfiles | Zinc finger matrin-type profile. | 52 | 82 | IPR000690 | GO:0003676|GO:0005634|GO:0008270 | |
| Pral5485g00012 | 323 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Pral5485g00012 | 323 | MobiDBLite | consensus disorder prediction | 190 | 323 | - | - | |
| Pral5485g00012 | 323 | SMART | CactinC_cactus_3 | 89 | 195 | - | - | |
| Pral5485g00012 | 323 | Pfam | Zinc-finger of C2H2 type | 52 | 76 | - | - | |
| Pral5485g00012 | 323 | Gene3D | Classic Zinc Finger | 46 | 89 | - | - | |
| Pral5485g00012 | 323 | Pfam | Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) | 135 | 182 | IPR031781 | - | |
| Pral5485g00012 | 323 | PANTHER | SPLICING FACTOR 3A SUBUNIT 2 | 1 | 133 | - | - | |
| Pral5485g00012 | 323 | PRINTS | Proline rich extensin signature | 189 | 210 | - | - | |
| Pral5485g00012 | 323 | PRINTS | Proline rich extensin signature | 232 | 249 | - | - | |
| Pral5485g00012 | 323 | PRINTS | Proline rich extensin signature | 214 | 230 | - | - | |
| Pral5485g00012 | 323 | PRINTS | Proline rich extensin signature | 250 | 275 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5485g00012 | Pral-Chr5485 | 59264 | 63273 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5485g00012 | 1 | 206 | C2H2 Transcription Factor Family | AT2G32600 | 79.825 | 7.44e-122 | 349 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5485g00012 | K12826 | - | vvi:100245136 | 397.127 |