Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5485g00011 ATGGATCGAGAATGGGGTTCAAAGCCTGGGAGTGGAGGAGCCGCCTCCGCCCAGAATGAAGCCATCGACCGTCGAGAGCGGCTTCGCCGACTTGCGCTCGAGACTATTGATCTTGCTAAAGACCCCTATTTCATGCGCAATCATCTGGGGAGCTATGAGTGCAAGCTTTGTCTCACATTACACAATAACGAGGGCAATTACTTGGCCCACACACAGGGTAAGCGGCATCAGACTAATCTGGCAAAGAGAGCAGCTCGTGAGGCCAAAGAGGCACCTGCTCAGCCTCAGCCCCACAAGCGTAAAGTCTCGGTTCGCAAGACAGTCAAGATTGGTCGGCCTGGGTACCGGGTGACTAAGCAATTTGATCCAGAGACAAAGCAAAGATCTCTTCTTTTCCAGATTGAATATCCTGAGATTGAAGAACTCACAAAGCCAAGGCATAGATTTATGTCTTCTTATGAGCAGAGGGTTCAACCCTTTGACAAAAGATTTCAGTATCTTTTGTTTGCAGCTGAACCGTATGAGATAATTGCTTTTAAGGTGCCCAGCACAGAGATTGACAAGTCCACACCAAAGTTTTTCTCGCATTGGGACTCGGACTCAAAAATGTTCACGTTGCAGTTATATTTCAAACCCAAGCCACCAGAGGCAAACAAACCACAGCCTCCATCTACAGCTAATGGCACAGCGGCACCTGGTGTCCCACCAAGGCCTGTGCCGCCGCCTCCTCAAGCTCCGCCACCACCTCCTCCTCCACCACAAGGACTACCTCCTGGTGCAGCTGTTGGAAATCCTCCTAGAGCCCCTCCACCTCCTATGCCTGGATCATTGCCGCCGCCTCCTCCTCCCATGTCAAATGGCCCTACACCTGCACCTCCTGGTGGAATGCCACCTCAACCCCCTGTTGCGAGCGGCTCAGCAGCTAGTTTCAACATGGGTTCTAGGCCCCCATCAATGCCACCGCCCCAAAACTATTTAGCCCAACAAATGCAGGGCCAGGGTATTCGTCCACCTCCACCACCTCCTAGCATGGGATAG 1038 0.5231 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEELTKPRHRFMSSYEQRVQPFDKRFQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDSDSKMFTLQLYFKPKPPEANKPQPPSTANGTAAPGVPPRPVPPPPQAPPPPPPPPQGLPPGAAVGNPPRAPPPPMPGSLPPPPPPMSNGPTPAPPGGMPPQPPVASGSAASFNMGSRPPSMPPPQNYLAQQMQGQGIRPPPPPPSMG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5485g00011 345 SMART CactinC_cactus_3 89 217 - -
Pral5485g00011 345 MobiDBLite consensus disorder prediction 212 345 - -
Pral5485g00011 345 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Pral5485g00011 345 Pfam Zinc-finger of C2H2 type 52 76 - -
Pral5485g00011 345 FunFam Splicing factor 3a subunit 2 94 218 - -
Pral5485g00011 345 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Pral5485g00011 345 Gene3D - 93 218 - -
Pral5485g00011 345 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Pral5485g00011 345 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Pral5485g00011 345 MobiDBLite consensus disorder prediction 1 21 - -
Pral5485g00011 345 Gene3D Classic Zinc Finger 46 89 - -
Pral5485g00011 345 PRINTS Proline rich extensin signature 254 271 - -
Pral5485g00011 345 PRINTS Proline rich extensin signature 236 252 - -
Pral5485g00011 345 PRINTS Proline rich extensin signature 272 297 - -
Pral5485g00011 345 PRINTS Proline rich extensin signature 211 232 - -
Pral5485g00011 345 MobiDBLite consensus disorder prediction 233 300 - -
Pral5485g00011 345 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5485g00011 Pral-Chr5485 59264 63273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5485g00011 1 228 C2H2 Transcription Factor Family AT2G32600 88.158 3.79e-142 402