Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5485g00007 ATGGCGGTTCCGGGTAGGCGCAATGGCCTAAACGACGACGACGACGACAACTTCGAAGATGACAATGCCCTCTTTGAAGAAAATGGCCTATTGGAGCTTGATGAAATTGATACGCCTCCTCATCTCCGCGACCTAGCTGTCGCCTCTCAGTTTGGTGACCTCGATAACCTCCGCCTTGCTCTAGATAACTTGACTGGAAGTATTGATGAACCTGTAGAAGATGGGGATACCGCTCTACATCTGACCTGCTTATATGGCCATTTATCGTGTGTTCAGCTACTTCTGGAAAGAGGAGCGAACATGGAATGTAAGGATGAAGATGGTGCTATTCCATTACATGATGCTTGTGCAGGAGGGTATGCTGAGATAGTCCAACTGCTACTTAACAGAGGTGATAATGGCAATGCAGAGCATATAAGGAGGATGCTTGAATCAGTTGATTCAGAGGGTGATACGCCTCTCCATCACGCTGCTAGAGGCGAGCATGTTGATGTCATTAGGTTATTGCTGTCTCATGGTGCATCTCCCACAAAGACCAACTTATATGGAAAGACCCCAGCAGAATTGCCTGACCACGGCACAGACGCAAGGAGATTGCTGGAAGCCGCGGCTGCTAGTTCCATACCATCTCACTAG 636 0.4843 MAVPGRRNGLNDDDDDNFEDDNALFEENGLLELDEIDTPPHLRDLAVASQFGDLDNLRLALDNLTGSIDEPVEDGDTALHLTCLYGHLSCVQLLLERGANMECKDEDGAIPLHDACAGGYAEIVQLLLNRGDNGNAEHIRRMLESVDSEGDTPLHHAARGEHVDVIRLLLSHGASPTKTNLYGKTPAELPDHGTDARRLLEAAAASSIPSH 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5485g00007 211 Gene3D - 40 113 IPR036770 -
Pral5485g00007 211 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515
Pral5485g00007 211 ProSiteProfiles Ankyrin repeat profile. 107 139 IPR002110 GO:0005515
Pral5485g00007 211 ProSiteProfiles Ankyrin repeat region circular profile. 149 175 - -
Pral5485g00007 211 ProSiteProfiles Ankyrin repeat region circular profile. 74 106 - -
Pral5485g00007 211 ProSiteProfiles Ankyrin repeat profile. 149 181 IPR002110 GO:0005515
Pral5485g00007 211 Pfam Ankyrin repeat 150 180 IPR002110 GO:0005515
Pral5485g00007 211 SUPERFAMILY Ankyrin repeat 45 188 IPR036770 -
Pral5485g00007 211 PANTHER SOWAH (DROSOPHILA) HOMOLOG 149 204 - -
Pral5485g00007 211 FunFam BRCA1-associated RING domain protein 1 39 208 - -
Pral5485g00007 211 ProSiteProfiles Ankyrin repeat region circular profile. 107 136 - -
Pral5485g00007 211 SMART ANK_2a 107 136 IPR002110 GO:0005515
Pral5485g00007 211 SMART ANK_2a 149 178 IPR002110 GO:0005515
Pral5485g00007 211 SMART ANK_2a 74 103 IPR002110 GO:0005515
Pral5485g00007 211 Pfam Ankyrin repeats (3 copies) 45 131 IPR002110 GO:0005515
Pral5485g00007 211 Gene3D - 114 207 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5485g00007 10 192 Ion Channels AT2G25600 29.756 6.57e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5485g00007 - - gmx:100527544 300.056