Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5485g00006 ATGGAGGTCACAGGCCAAGAACTTGTGGTGTGGAAGAAGGATCAAGCCGGCCAAGTCATGAAGGGCAAGCGCACCAAGCGTTCGAGGCTACCTTCTCCACTCAGGCTATCCATGGCTTCTTCTTCCTCCAGCGCCGGCAGAACCAGCACCGACGACAATTCCGGTGGATCATCATCAGTAGTAGATATGGCTACAACTTCAACTGATCAATTAAGGGTTAGCACAGAAGAAGAAGACATGGCTAACTGTTTGATCCTTCTGGCTCAAGGCCATACCCGTGACGAGCCCTCTTCCCACCACAACAACAACAACGATAAGGCTTCCTCCGGGCTATACGTTTATCAGTGCAAGACCTGTGATCGATGCTTCCCTTCGTTCCAAGCACTTGGCGGACACAGAGCCAGCCACAAGAAACCAAAGCCGAACAATTCTGAAGAAAAGCTGCAATCAGTTGCATTTGCGAACGAAGAGGGTCATGATCCTTATGACCCCACCGGCCCAAGCTTCGTCCTTTCCTTGCAGATATCAAATAGGGCTTCGCACAGCAGCAATAGTAACACTAATAAGTCGAAAGTTCATGAGTGTTCTATATGTGGGGCTGAATTCACCTCTGGGCAGGCTTTGGGGGGTCATATGAGGCGCCACAGAACGTTGGTGAACAATTCTGCGACGTGTACGACCAGCACCGGGAATAATAATTCTCAGCTCCAGGAAGCCAACAAGCCCAAGAATGTCTTGAAGTTGGATTTGAATCTTCCGGCACCAGAAGATGATCACAGAGAATCCAAGTTACCTTTTCAATCTAAAGAAAATGTTCTTGTTTTCTCTGCATCTTCTTTGGTGGATTGCCATTATTGA 858 0.4837 MEVTGQELVVWKKDQAGQVMKGKRTKRSRLPSPLRLSMASSSSSAGRTSTDDNSGGSSSVVDMATTSTDQLRVSTEEEDMANCLILLAQGHTRDEPSSHHNNNNDKASSGLYVYQCKTCDRCFPSFQALGGHRASHKKPKPNNSEEKLQSVAFANEEGHDPYDPTGPSFVLSLQISNRASHSSNSNTNKSKVHECSICGAEFTSGQALGGHMRRHRTLVNNSATCTTSTGNNNSQLQEANKPKNVLKLDLNLPAPEDDHRESKLPFQSKENVLVFSASSLVDCHY 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5485g00006 285 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Pral5485g00006 285 Pfam C2H2-type zinc finger 192 216 - -
Pral5485g00006 285 Pfam C2H2-type zinc finger 113 139 - -
Pral5485g00006 285 SMART c2h2final6 114 136 IPR013087 -
Pral5485g00006 285 SMART c2h2final6 193 215 IPR013087 -
Pral5485g00006 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 215 IPR013087 -
Pral5485g00006 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Pral5485g00006 285 SUPERFAMILY beta-beta-alpha zinc fingers 113 215 IPR036236 -
Pral5485g00006 285 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Pral5485g00006 285 MobiDBLite consensus disorder prediction 1 66 - -
Pral5485g00006 285 Gene3D Classic Zinc Finger 111 215 - -
Pral5485g00006 285 MobiDBLite consensus disorder prediction 34 66 - -
Pral5485g00006 285 PANTHER ZINC FINGER PROTEIN ZAT5 65 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5485g00006 Pral-Chr5485 35084 41771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5485g00006 19 285 C2H2 Transcription Factor Family AT5G03510 44.792 1.61e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5485g00006 zf-C2H2_6 5.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5485g00006 - - tcc:18598059 270.011