Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5485g00003 ATGATGGAGTGCATCGTGGAGCCGCAGAAGTCAGCCCGGGGGATTTCTCAACTAGATGACGGCTCTCTTTCTGACATAGGACGTGGCCGTCACGGGTGTTCGCACTATAGAAGGAGATGCAAGATAATAGCACCCTGTTGCAATGAAATATTCGATTGCAGACATTGCCATAATGAATCTAAGAATTCGATTGAACTGGACCCTGTTGAGCGCCATGACCTTCCTCGTCACGATTTAAAGAGAGTTATCTGCTCCTTGTGTAGCACCGAGCAAGATGTTCAACAGATGTGCATTCAGTGCGGTGTTTGCATGGGGAACTACTTCTGCTCCAAGTGCAAGTTTTTTGATGACGATGTATCAAAGAATCAGTACCATTGCGATGAATGTGGCATCTGCAGAATTGGGGGCGAGGAGAATTTTTTCCACTGCAACAAATGTGGATGTTGCTATTCAACACTGTTAAAGGACTCACACCGTTGTGTGGAAAAAGCCATGCATCAGAATTGTCCTGTTTGCTTTGAGTTTCTTTTTGACACCACAAAAGACATTACTGTATTGCGATGTTGTCACTCTATCCATCTGGAATGTGTGAAAGAAATGGCGCGGCATTTCCAGTATTCTTGTCCTGTTTGCTCAAAATCTTTTTGTGACATGTCGCGCGTGTGGGAGAGACTGGATCATGAGGTTGCATCAACACCTATGCCAGATATATATCAAAATAAGATGGTCTGGATTCTGTGCAATGATTGTGGGGAAACATCAGAGGTGAGCTTTCACGTTTTGGCGCATAAGTGTCTAAAATGTAAATCCTACAACACCAGACTGACGCAAGGTGGACCTGCTTCATCATGTTCATCCAACGTTGAAGACGTGCTGCAGTGA 882 0.4467 MMECIVEPQKSARGISQLDDGSLSDIGRGRHGCSHYRRRCKIIAPCCNEIFDCRHCHNESKNSIELDPVERHDLPRHDLKRVICSLCSTEQDVQQMCIQCGVCMGNYFCSKCKFFDDDVSKNQYHCDECGICRIGGEENFFHCNKCGCCYSTLLKDSHRCVEKAMHQNCPVCFEFLFDTTKDITVLRCCHSIHLECVKEMARHFQYSCPVCSKSFCDMSRVWERLDHEVASTPMPDIYQNKMVWILCNDCGETSEVSFHVLAHKCLKCKSYNTRLTQGGPASSCSSNVEDVLQ 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5485g00003 293 SUPERFAMILY CHY zinc finger-like 29 104 IPR037274 GO:0008270
Pral5485g00003 293 FunFam RING finger and CHY zinc finger domain-containing protein 1 240 284 - -
Pral5485g00003 293 ProSiteProfiles Zinc finger CTCHY-type profile. 104 168 IPR017921 -
Pral5485g00003 293 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 28 277 - -
Pral5485g00003 293 Pfam CHY zinc finger 33 114 IPR008913 GO:0008270
Pral5485g00003 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 214 IPR013083 -
Pral5485g00003 293 Gene3D - 240 281 - -
Pral5485g00003 293 SUPERFAMILY Zinc hairpin stack 105 162 IPR037275 -
Pral5485g00003 293 ProSiteProfiles Zinc finger CHY-type profile. 26 102 IPR008913 GO:0008270
Pral5485g00003 293 SUPERFAMILY RING/U-box 167 218 - -
Pral5485g00003 293 Pfam Zinc-ribbon 216 274 IPR039512 -
Pral5485g00003 293 ProSiteProfiles Zinc finger RING-type profile. 169 212 IPR001841 -
Pral5485g00003 293 SMART ring_2 169 211 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5485g00003 Pral-Chr5485 18151 21321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5485g00003 22 278 C2H2 Transcription Factor Family AT3G18290 38.023 4.18e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5485g00003 K10144 - zju:107431972 533.872